DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: ASPA_HELPY (Aspartate ammonia-lyase OS=Helicobacter pylori GN=aspA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            IGN +++ +    G  +LNVF+P+IA  L HS  +LG A  +    CV GI AN +     +  S+ +VT+LNP IGY+ +A +AK+A K   ++ D AL+  +L  E+ D++  PE M+ P
Sbjct:  339 IGNDLSVALAAEGGQLQLNVFEPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: ASPA_HELPJ (Aspartate ammonia-lyase OS=Helicobacter pylori J99 GN=aspA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            IGN +++ +    G  +LNVF+P+IA  L HS  +LG A  +    CV GI AN +     +  S+ +VT+LNP IGY+ +A +AK+A K   ++ D AL+  +L  E+ D++  PE M+ P
Sbjct:  339 IGNDLSVALAAEGGQLQLNVFEPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_MYCTU (Fumarate hydratase class II OS=Mycobacterium tuberculosis GN=fumC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = -3
Query:  379 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 693
            IGN  AI  GG+NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  341 IGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_MYCBO (Fumarate hydratase class II OS=Mycobacterium bovis GN=fumC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = -3
Query:  379 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 693
            IGN  AI  GG+NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  341 IGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: ASPA_PSEFL (Aspartate ammonia-lyase OS=Pseudomonas fluorescens GN=aspA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            IGN +A+T+    G  +LNV +P+IA  +  S+RLL  A     ++C+ GI AN  R  +L+  S+ LVT+LNP IGY+NA  +A+ A + G  + +   + G+L+    D+++ PE MI P
Sbjct:  350 IGNDLALTMAAEGGQLQLNVMEPLIAFKIFDSIRLLQRAMDMLREHCIVGITANEARCRELVEHSIGLVTALNPYIGYENATRIARIALESGRGVLELVREEGLLDDAMLDDILRPENMIAP 471          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_HALSA (Fumarate hydratase class II OS=Halobacterium salinarium GN=fumC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            +GN  AI  G + G  +LN++KP++A   L S  +L +ASA+F +  V  ++AN       +  S+ L T+LNP IGYD A+ VAK A KEG T+ +  ++ G L+  E  +++ PE M
Sbjct:  341 VGNDAAIAAGAAEGQIDLNLYKPVLAHNFLQSADMLANASAAFGEKFVAKLEANEAACEAQVERSMALATALNPTIGYDKASEVAKAALKEGKTVTEVVVEKGYLSEAEAADVLDPEGM 459          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: ASPA_PSEAE (Aspartate ammonia-lyase OS=Pseudomonas aeruginosa GN=aspA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 46/122 (37.70%), Postives = 74/122 (60.66%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            IGN +A+T+    G  +LNV +P+IA  +  S+RLL  A     ++C+ GI AN ER  +L+  S+ LVT+LNP IGY+N+  +AK A + G  + +   +  +L+     ++++PE MI P
Sbjct:  346 IGNDLALTLAAEGGQLQLNVMEPLIAYKIFDSIRLLQRAMDMLREHCITGITANVERCHELVEHSIGLVTALNPYIGYENSTRIAKTALESGRGVLELVREEKLLDEATLADILLPENMIAP 467          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: ASPA_BACSU (Aspartate ammonia-lyase OS=Bacillus subtilis GN=ansB PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 43/122 (35.25%), Postives = 75/122 (61.48%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            IGN   I +    G  ELNV +P++   LL S+ ++ +   SF  NC++GI+AN +R+ + + +S  ++T++NP +GY+ AA +A++A   G +++D  L+  VL  EE D ++ P +M  P
Sbjct:  344 IGNDNTICLASEAGQLELNVMEPVLVFNLLQSISIMNNGFRSFTDNCLKGIEANEKRMKQYVEKSAGVITAVNPHLGYEAAARIAREAIMTGQSVRDLCLQHDVLTEEELDIILNPYEMTKP 465          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFT (Fumarate hydratase class II OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=fumC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 46/116 (39.66%), Postives = 72/116 (62.07%), Query Frame = -3
Query:  346 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 693
            IG+H A+TV G +G+F+LNV  P+IA  LL S  LLG+         + G++  ++R+ ++L  + +LVT+LNP IGY+ AA +AK+A+KE   + + A +   LN  E   L+ P
Sbjct:  342 IGHHTAVTVAGQSGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESNLNPVELARLLDP 457          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFA (Fumarate hydratase class II OS=Xylella fastidiosa GN=fumC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 46/116 (39.66%), Postives = 72/116 (62.07%), Query Frame = -3
Query:  346 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 693
            IG+H A+TV G +G+F+LNV  P+IA  LL S  LLG+         + G++  ++R+ ++L  + +LVT+LNP IGY+ AA +AK+A+KE   + + A +   LN  E   L+ P
Sbjct:  342 IGHHTAVTVAGQSGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESNLNPVELARLLDP 457          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ASPA_HELPY1.278e-1938.52Aspartate ammonia-lyase OS=Helicobacter pylori GN=... [more]
ASPA_HELPJ1.278e-1938.52Aspartate ammonia-lyase OS=Helicobacter pylori J99... [more]
FUMC_MYCTU4.858e-1945.71Fumarate hydratase class II OS=Mycobacterium tuber... [more]
FUMC_MYCBO4.858e-1945.71Fumarate hydratase class II OS=Mycobacterium bovis... [more]
ASPA_PSEFL1.846e-1838.52Aspartate ammonia-lyase OS=Pseudomonas fluorescens... [more]
FUMC_HALSA5.371e-1838.66Fumarate hydratase class II OS=Halobacterium salin... [more]
ASPA_PSEAE5.371e-1837.70Aspartate ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
ASPA_BACSU5.371e-1835.25Aspartate ammonia-lyase OS=Bacillus subtilis GN=an... [more]
FUMC_XYLFT9.162e-1839.66Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_XYLFA9.162e-1839.66Fumarate hydratase class II OS=Xylella fastidiosa ... [more]

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Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
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