CN184829

Overview
NameCN184829
Unique NameCN184829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SUS2_PEA (Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.408e-68
Identity = 118/156 (75.64%), Postives = 138/156 (88.46%), Query Frame = -3
Query:  219 NRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLA 686
            NR RNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEII +G SG+HIDPYH +QA+E+LVDFF++CK DP++W+K+S GGL+RI E+YTWKIYS+RL+TL GVY FWK+VS L+R E+RRYLEMFY LK+R LA SVP+A
Sbjct:  652 NRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIEHGVSGFHIDPYHPDQASELLVDFFQRCKEDPNHWNKVSDGGLQRIYERYTWKIYSERLMTLAGVYSFWKYVSKLERRETRRYLEMFYILKFRDLANSVPIA 807          
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SUS2_ARATH (Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g49190 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 7.964e-67
Identity = 118/159 (74.21%), Postives = 132/159 (83.02%), Query Frame = -3
Query:  210 NRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 686
            NR RNGELYRYI DTKG FVQPA YEAFGLTVVE+MTC LPTFATC GGPAEII NG SG+HIDPYH +Q A  LV FFE C  +P++W KIS GGLKRI E+YTWK YS+RLLTL GVY FWKHVS L+R E+RRYLEMFY+LK+R LA S+PLA +E
Sbjct:  646 NRARNGELYRYIADTKGVFVQPAFYEAFGLTVVESMTCALPTFATCHGGPAEIIENGVSGFHIDPYHPDQVAATLVSFFETCNTNPNHWVKISEGGLKRIYERYTWKKYSERLLTLAGVYAFWKHVSKLERRETRRYLEMFYSLKFRDLANSIPLATDE 804          
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SUSY_BETVU (Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS1 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.742e-66
Identity = 117/159 (73.58%), Postives = 134/159 (84.28%), Query Frame = -3
Query:  210 NRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 686
            NRVRNGELYRYICD  G F QPA YEAFGLTVVEAMTCGLPTFATC GGPAEII +G SG+HIDPYH +QA E + +FF KC+ DP+YW KIS GGL RI+E+YTW+ YS+RL+TL GVYGFWK+VS L+R E+RRYLEMFY LK+R LA SVPLA +E
Sbjct:  595 NRVRNGELYRYICDKGGIFAQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEDGVSGFHIDPYHADQA-EKMTEFFVKCREDPNYWTKISAGGLLRIKERYTWQKYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLANSVPLATDE 752          
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SUSY_SACOF (Sucrose synthase (Fragment) OS=Saccharum officinarum GN=SUS1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.255e-45
Identity = 91/146 (62.33%), Postives = 110/146 (75.34%), Query Frame = -3
Query:  249 NRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKY 686
            NRVRNGELY+YICDTKGAFVQPA YEAF L                   P EII +G SG HIDPYH ++ A+ILV+FF+KC ADPSYWD+IS GG +RI EKYTWK+YS+RL+TLTG YGFW +VS L+R ++ RY++MFYAL+Y
Sbjct:   75 NRVRNGELYQYICDTKGAFVQPA-YEAFRLDCDRVHEVRSAKDRDLPWRPCEIIADGVSGLHIDPYHSDKDADILVNFFDKCNADPSYWDEISQGG-QRIYEKYTWKLYSERLMTLTGAYGFWNYVSKLERGDT-RYIDMFYALEY 217          
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SPS_BETVU (Sucrose-phosphate synthase OS=Beta vulgaris GN=SPS PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = -3
Query:  342 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 668
            E+YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  +DP+  +  A  L+    K  AD   W K    GLK I   Y+W  +S+  L+
Sbjct:  557 EIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIQRVLDNGLLVDPHEQQSIATALL----KLVADKQLWTKCQQNGLKNI-HLYSWPEHSKTYLS 660          
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SPS_SPIOL (Sucrose-phosphate synthase OS=Spinacia oleracea GN=SPS1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = -3
Query:  342 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 668
            ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +II    +G  IDP+  +  A+ L+    K  AD   W K    GLK I   ++W  + +  L+
Sbjct:  567 DIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIIGVLDNGLLIDPHDQKSIADALL----KLVADKHLWTKCRQNGLKNI-HLFSWPEHCKNYLS 670          
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SPS_MAIZE (Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = -3
Query:  342 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 668
            E+YR     KG F+ PAL E FGLT++EA   GLP  AT  GGP +I     +G  +DP+     A+ L+    K  AD + W +    GL+ I   Y+W  + +  LT
Sbjct:  572 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPHDQNAIADALL----KLVADKNLWQECRRNGLRNI-HLYSWPEHCRTYLT 675          
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SPS_ORYSJ (Probable sucrose-phosphate synthase OS=Oryza sativa subsp. japonica GN=SPS1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = -3
Query:  342 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 668
            E+YR     KG F+ PAL E FGLT++EA   GLP  AT  GGP +I     +G  +DP+     A+ L+    K  AD + W +    GL+ I + Y+W  + +  LT
Sbjct:  586 EIYRLTGKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDIKNALNNGLLVDPHDQHAIADALL----KLVADKNLWQECRKNGLRNI-QLYSWPEHCRTYLT 689          
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SPS_ORYSI (Probable sucrose-phosphate synthase OS=Oryza sativa subsp. indica GN=SPS1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = -3
Query:  342 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 668
            E+YR     KG F+ PAL E FGLT++EA   GLP  AT  GGP +I     +G  +DP+     A+ L+    K  AD + W +    GL+ I + Y+W  + +  LT
Sbjct:  586 EIYRLTGKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDIKNALNNGLLVDPHDQHAIADALL----KLVADKNLWQECRKNGLRNI-QLYSWPEHCRTYLT 689          
BLAST of CN184829 vs. ExPASy Swiss-Prot
Match: SPS_SOLTU (Sucrose-phosphate synthase OS=Solanum tuberosum GN=SPS PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 44/111 (39.64%), Postives = 57/111 (51.35%), Query Frame = -3
Query:  348 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTW----KIYSQRL 668
            ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  +DP H +QA   + D   K  AD   W K    GLK I   ++W    K Y  R+
Sbjct:  557 DIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGLLVDP-HDQQA---IADALLKLVADKQLWAKCRANGLKNI-HLFSWPEHCKTYLSRI 662          
The following BLAST results are available for this feature:
BLAST of CN184829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SUS2_PEA9.408e-6875.64Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 S... [more]
SUS2_ARATH7.964e-6774.21Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g... [more]
SUSY_BETVU6.742e-6673.58Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS... [more]
SUSY_SACOF2.255e-4562.33Sucrose synthase (Fragment) OS=Saccharum officinar... [more]
SPS_BETVU6.622e-1339.45Sucrose-phosphate synthase OS=Beta vulgaris GN=SPS... [more]
SPS_SPIOL1.475e-1238.53Sucrose-phosphate synthase OS=Spinacia oleracea GN... [more]
SPS_MAIZE3.286e-1237.61Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1... [more]
SPS_ORYSJ7.321e-1237.61Probable sucrose-phosphate synthase OS=Oryza sativ... [more]
SPS_ORYSI7.321e-1237.61Probable sucrose-phosphate synthase OS=Oryza sativ... [more]
SPS_SOLTU9.562e-1239.64Sucrose-phosphate synthase OS=Solanum tuberosum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006D02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184829 ID=CN184829; Name=CN184829; organism=Citrus sinensis; type=EST; length=688bp
GAGGATGGAATTGATGAGGGTGGAACACCCAAAAGTACAAACAATGCTGA
GAAATGCAAAAAGGCAAAAAAAAATTGGAAAAAAGAAAATTTAACGGGGG
GAAAAAAGTCTTTGTCCAATCGCAATCCCGGAAGCGACATTATTCTCCAC
AACTCAAGAAACCTCCACTCGGACCAACCACCCTGAGAGCTTCCCTCAAT
GTCCATTTACTCCTCCACAGCCAGAGGAACAGATTCAGCCAGCTTACGGT
ACTTGAGAGCATAAAACATTTCAAGGTATCGACGGCTCTCAAGACGATCA
AGGTTAGATACATGTTTCCAGAACCCATAGACTCCAGTCAGGGTCAGAAG
CCTCTGAGAGTAAATTTTCCATGTATACTTCTCTTCAATACGCTTCAGGC
CACCCAGTGATATCTTGTCCCAGTATGAGGGATCTGCCTTGCACTTCTCA
AAGAAGTCAACAAGGATCTCAGCAGCCTGCTCACCATGGTAAGGATCAAT
GTGGTAGCCAGATTTCCCGTTAACGATAATCTCAGCGGGGCCACCCTTGC
AAGTTGCAAATGTTGGCAATCCACAGGTCATGGCCTCAACAACAGTCAAG
CCAAAGGCCTCATACAGTGCAGGTTGCACAAAAGCTCCCTTTGTATCACA
AATGTACCGGTACAATTCACCGTTCCTGACCCGATTCA
back to top