CN184827

Overview
NameCN184827
Unique NameCN184827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.310e-99
Identity = 172/224 (76.79%), Postives = 198/224 (88.39%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VRDFHA+IGKETR Q  EKWGG PD+L+ACVGGGSNA+GLFHEF+++  +RLIGVEAAG G+D+ KHAATL+ G VGVLHGA+SYLLQ+EDGQ+IE HSISAGLDYPGVGPEHS+LKD  RAEYY+VTD +AL+ F++ SRLEGIIPALET+HA+AYLE LCP L    ++V+N SGRGDKDVQT  K L
Sbjct:  184 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMIVRDFHAIIGKETRVQCQEKWGGLPDILLACVGGGSNAIGLFHEFIDEPSIRLIGVEAAGEGVDTDKHAATLTLGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDIRRAEYYSVTDKQALDGFQQLSRLEGIIPALETSHAIAYLETLCPQLNGSPRIVINCSGRGDKDVQTVAKVL 407          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.269e-94
Identity = 166/224 (74.11%), Postives = 195/224 (87.05%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VRDFHAVIG+ET++Q  + +G  PDVL+ACVGGGSNAMGLFH FV DK VR+IGVEAAG G+++G+HAAT+++G VGVLHGA+S LLQ++DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD EA+EA +  S+LEGIIPALETAHA AYLEKLCPTL   +++V+N SGRGDKDV T  + L
Sbjct:  190 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRVGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.657e-94
Identity = 165/224 (73.66%), Postives = 195/224 (87.05%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VRDFHAVIG+ET++Q  + +G  PDVL+ACVGGGSNAMGLFH FV DK VR+IGVEAAG G+++G+HAAT+++G +GVLHGA+S LLQ++DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD EA+EA +  S+LEGIIPALETAHA AYLEKLCPTL   +++V+N SGRGDKDV T  + L
Sbjct:  190 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRIGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 4.822e-94
Identity = 167/224 (74.55%), Postives = 194/224 (86.61%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VRDFHAVIG+E+++Q  E +G  PDVL+ACVGGGSNAMGLFH FV D  VRLIGVEAAG G+ SG+HAAT+++G  GVLHGA+S LLQ+ DGQ++E HSISAGLDYPGVGPEHS+L++ GRAEY  VTD +AL+A +  S LEGIIPALETAHA A+LE+LCPTLADGT+VV+N SGRGDKDV T  + L
Sbjct:  191 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEESKQQCQEAFGRLPDVLMACVGGGSNAMGLFHPFVQDMSVRLIGVEAAGDGVASGRHAATITEGRAGVLHGAMSLLLQDGDGQVMEAHSISAGLDYPGVGPEHSYLREIGRAEYAAVTDQQALDALRLVSELEGIIPALETAHAFAWLEQLCPTLADGTEVVINCSGRGDKDVNTVAEKL 414          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 6.298e-94
Identity = 165/226 (73.01%), Postives = 194/226 (85.84%), Query Frame = -1
Query:  159 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 836
            KDATSEAIRDWV+NVETTHYILGSVAGPHP+PM+VRDFHAVIG+E ++Q LE +G  PD+L+ACVGGGSNAMGLFH FV +K VRLIGVEAAG G+++ KHAAT++KG VG+LHG++S LLQ++DGQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL+A K  S LEGIIPALETAHA A+LEKLCPTL   T++V+N SGRGDKDV T    L +
Sbjct:  188 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPMIVRDFHAVIGEEAKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTEKHAATITKGSVGILHGSMSLLLQDKDGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDAEALDALKLVSELEGIIPALETAHAFAWLEKLCPTLDKDTEIVINCSGRGDKDVNTVASSLNI 413          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.074e-93
Identity = 170/224 (75.89%), Postives = 194/224 (86.61%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VRDFHAVIG+ETR+Q  E +G  PDVL+ACVGGGSNAMGLFH FV   DVRLIGVEAAG G+ +G+HAAT+++G VGVLHGA+S LLQ++DGQ+ E HSISAGLDYPGVGPEHS+L++ GRAEY  VTD EALEA +  SRLEGIIPALETAHA A+LE LCPTL+ GT+VV+N SGRGDKDV T  + L
Sbjct:  189 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGQETRQQCREAFGRLPDVLMACVGGGSNAMGLFHPFVECTDVRLIGVEAAGDGVATGRHAATITEGRVGVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDAEALEALQLVSRLEGIIPALETAHAFAWLETLCPTLSAGTEVVLNCSGRGDKDVNTVAERL 412          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 2.393e-93
Identity = 163/225 (72.44%), Postives = 193/225 (85.78%), Query Frame = -1
Query:  162 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VRDFHAVIG+E ++Q LE +G  PDVL+ACVGGGSNAMGLFH F+ D+ VR+IGVEAAG G+ +G+HAAT+++G +GVLHGA+S LLQ+ +GQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD EAL A +  S  EGIIPALETAHALA+LEKLCPTL+ G ++V+N SGRGDKDV T  + L+
Sbjct:  189 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEEAKKQCLEAFGRSPDVLLACVGGGSNAMGLFHPFIEDRSVRMIGVEAAGDGVHTGRHAATITEGRIGVLHGAMSLLLQDSNGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDQEALSALQLLSEKEGIIPALETAHALAFLEKLCPTLSSGKEIVINCSGRGDKDVNTVAEKLK 413          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.125e-93
Identity = 166/224 (74.11%), Postives = 190/224 (84.82%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VRDFHAVIG E R Q  E +G  PDVL+ACVGGGSNAMGLFH FV D  VRLIGVEAAG G+ +G+HAAT+++G VGVLHGA+S LLQ++DGQ+ E HSISAGLDYPGVGPEHS+L+D GRAEY  VTDDEA+ A +  S LEGIIPALETAHA A+LE LCPTL +G+++V+N SGRGDKDV T  + L
Sbjct:  191 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGNEAREQCKESFGRLPDVLLACVGGGSNAMGLFHPFVQDTSVRLIGVEAAGDGVATGRHAATITEGRVGVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLRDIGRAEYGAVTDDEAITALRLVSELEGIIPALETAHAFAWLEMLCPTLPNGSEIVINCSGRGDKDVNTVAEKL 414          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.125e-93
Identity = 163/226 (72.12%), Postives = 193/226 (85.40%), Query Frame = -1
Query:  159 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 836
            KDATSEAIRDWV+NVETTHYILGSVAGPHP+PM+VRDFHAVIG+E ++Q +E +G  PD+L+ACVGGGSNAMGLFH FV +K VRLIGVEAAG G+++ KHAAT++KG VG+LHG++S LLQ+++GQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL A K  S LEGIIPALETAHA A+LEKLCPTL   T++V+N SGRGDKDV T    L +
Sbjct:  189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPMIVRDFHAVIGEEAKKQCVESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTDKHAATITKGSVGILHGSMSLLLQDKNGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDTEALNALKLVSELEGIIPALETAHAFAWLEKLCPTLEKNTEIVINCSGRGDKDVNTVASSLDI 414          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 9.094e-93
Identity = 163/226 (72.12%), Postives = 191/226 (84.51%), Query Frame = -1
Query:  159 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 836
            KDATSEAIRDWV+NVETTHYILGSVAGPHP+P +VRDFHAVIG+ET++Q LE +G  PD+L+ACVGGGSNAMGLFH FV +  VRLIGVEAAG G+D+ KHAAT++KG VG+LHG++S LLQ+++GQ+ E HSISAGLDYPGVGPEHS LKD GRAEY +VTD EAL+A K  S LEGIIPALETAHA A+L+KLCPTL   T +V+N SGRGDKDV T    L +
Sbjct:  189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALKLVSELEGIIPALETAHAFAWLDKLCPTLEKDTNIVINCSGRGDKDVNTVASSLDI 414          
The following BLAST results are available for this feature:
BLAST of CN184827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 451
Match NameE-valueIdentityDescription
TRPB1_ANASP1.310e-9976.79Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]
TRPB_PROM11.269e-9474.11Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROMT1.657e-9473.66Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNSC4.822e-9474.55Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMP6.298e-9473.01Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNPW1.074e-9375.89Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMA2.393e-9372.44Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNS33.125e-9374.11Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROM53.125e-9372.12Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROMS9.094e-9372.12Tryptophan synthase beta chain OS=Prochlorococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184827 ID=CN184827; Name=CN184827; organism=Citrus sinensis; type=EST; length=836bp
GAGGGTAATATATAAAGTTTTAACTCAAATTACATAAGATGGTTCTCACA
TCTCTGAAATAACTAATGATACAAAATTCAAAAACAGAAGCTCAAGCAAC
CCATTTATTTGTTTTCAGTAAATGAATCATATATTGTGGGTTACAAGCAT
TACCATCAAACTTGCAAATATTTGATCGCTGTCTGGACATCCTTGTCACC
TCTGCCACTGAAGTTAACCACAACCTTAGTACCATCAGCAAGAGTTGGGC
ATAGCTTCTCCAAATAAGCCAATGCATGAGCAGTCTCCAAAGCTGGGATT
ATACCCTCTAGCCGTGATGACCTCTTGAAAGCTTCCAATGCTTCATCATC
TGTGACATTATAGTACTCAGCACGCCCTTCATCTTTCAGAAAACTATGCT
CAGGTCCAACTCCAGGGTAATCTAAGCCTGCACTAATGGAGTGTGGCTCA
ATTATTTGCCCATCTTCATTCTGCAACAAATAGCTCAAAGCACCATGCAA
CACCCCAACTTCTCCTTTGGACAAGGTAGCAGCATGTTTGCCACTGTCTA
GACCAAAACCTGCTGCCTCCACACCAATCAACCTAACATCCTTGTCATTA
ACAAATTCGTGGAAGAGACCCATGGCATTTGAACCACCACCAACGCATGC
AATCAGCACATCTGGTTTCCCACCCCATTTCTCCAATGCTTGTCTTCTTG
TTTCTTTTCCAATCACAGCATGGAAATCTCTGACCATCATGGGGTACGGA
TGAGGCCCGGCAACAGATCCCAGAATGTAATGGGTAGTTTCCACATTAGT
CACCCAGTCCCGTATAGCTTCTGATGTAGCATCCTT
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