CN184827

Overview
NameCN184827
Unique NameCN184827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_STRCO (Tryptophan synthase beta chain OS=Streptomyces coelicolor GN=trpB PE=3 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.506e-79
Identity = 142/223 (63.68%), Postives = 175/223 (78.48%), Query Frame = -1
Query:  168 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 836
            KDA +EA RDWV NV+ THY+ G+VAGPHP+P MVRDFH VIG E RRQ LE+ G  PD  IACVGGGSNA+GLFH F+ D DVRLIG E AG G+++G+HAATL+ GE G+LHG+ SY+LQ+++GQI EP+SISAGLDYPG+GPEH++LKD GR EY  VTDD A++A +  SR EGIIPA+E+AHALA   ++   L     +VVN SGRGDKD+ TA +Y
Sbjct:  180 KDAINEAFRDWVANVDRTHYLFGTVAGPHPFPAMVRDFHRVIGVEARRQLLEQAGRLPDAAIACVGGGSNAIGLFHAFIPDADVRLIGCEPAGHGVETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALEVGRELGRDGLLVVNLSGRGDKDMDTAARY 402          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_OCHA4 (Tryptophan synthase beta chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=trpB PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.506e-79
Identity = 139/224 (62.05%), Postives = 176/224 (78.57%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDA +EA+RDWVTNVE T+Y++G+ AGPHPYP +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GLD  +H A++S G  GVLHG  +YLLQN+DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + DDEAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  179 KDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGNEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLDGEEHCASMSAGRPGVLHGNRTYLLQNDDGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDDEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDQVMIVNLSGRGDKDVHTVGKLL 402          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_DECAR (Tryptophan synthase beta chain OS=Dechloromonas aromatica (strain RCB) GN=trpB PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.967e-79
Identity = 143/219 (65.30%), Postives = 176/219 (80.37%), Query Frame = -1
Query:  180 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 836
            KDA +EA+RDWVTN+  T YI+G+VAGPHPYPM+VRDF  +IG+E   Q  E  G +PD +IACVGGGSNAMG+F+ ++N + VRLIGVEAAG G+++G+H+A+L+ G  GVLHG  +YLLQ+EDGQIIE HS+SAGLDYPGVGPEH++LKD GRAEY  VTD EAL AF    R+EGIIPALE++HALAY  KL PTLA    ++VN SGRGDKD+ T
Sbjct:  172 KDALNEAMRDWVTNIHNTFYIIGTVAGPHPYPMLVRDFQKIIGEECLVQMPEMTGRQPDAVIACVGGGSNAMGIFYPYINVEGVRLIGVEAAGDGMETGRHSASLTAGVPGVLHGNRTYLLQDEDGQIIETHSVSAGLDYPGVGPEHAWLKDLGRAEYQPVTDSEALAAFHTLCRIEGIIPALESSHALAYAAKLAPTLAKDKILLVNLSGRGDKDMHT 390          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_STRAW (Tryptophan synthase beta chain OS=Streptomyces avermitilis GN=trpB PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.569e-79
Identity = 140/223 (62.78%), Postives = 174/223 (78.03%), Query Frame = -1
Query:  168 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 836
            KDA +EA RDWV NV+ THY+ G+VAGPHP+P MVRDFH VIG E RRQ LE+ G  PD  +ACVGGGSNA+GLFH F+ D  VRLIG E AG GL++G+HAATL+ GE G+LHG+ SY+LQ+++GQI EP+SISAGLDYPG+GPEH++LKD GR EY  VTDD A++A +  SR EGIIPA+E+AHALA   ++   L     ++VN SGRGDKD+ TA +Y
Sbjct:  180 KDAINEAFRDWVANVDRTHYLFGTVAGPHPFPAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFIPDTGVRLIGCEPAGHGLETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALEIGKELGKDGLILVNLSGRGDKDMDTAARY 402          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK5 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=trpB PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.569e-79
Identity = 141/219 (64.38%), Postives = 175/219 (79.91%), Query Frame = -1
Query:  180 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 836
            KDA +EA+R WV N+E T Y++GSV GPHPYP MVRDF  +IG ET+ Q L+K G  P+ +IACVGGGSN+MG+F+ FV DK V+LIGVEAAG G+D+ KHAA+++KG VGVLHG ++YL+Q+++GQI+  +S+SAGLDYPGVGPEH++LKD  RAEY  VTD EAL+AF   SR EGIIPALE++HALAY  KL P L+    VVVN SGRGDKDV T
Sbjct:  170 KDAVNEALRKWVENIEDTFYVMGSVVGPHPYPTMVRDFQRIIGDETKEQILKKEGKLPNYIIACVGGGSNSMGIFYPFVEDKSVKLIGVEAAGLGVDTDKHAASMAKGSVGVLHGMMTYLIQDDEGQILPVYSVSAGLDYPGVGPEHAYLKDTKRAEYTYVTDQEALDAFGYLSRCEGIIPALESSHALAYTMKLAPELSKEEIVVVNISGRGDKDVDT 388          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK1 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain NBRC 12016) GN=trpB PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.569e-79
Identity = 141/219 (64.38%), Postives = 175/219 (79.91%), Query Frame = -1
Query:  180 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 836
            KDA +EA+R WV N+E T Y++GSV GPHPYP MVRDF  +IG ET+ Q L+K G  P+ +IACVGGGSN+MG+F+ FV DK V+LIGVEAAG G+D+ KHAA+++KG VGVLHG ++YL+Q+++GQI+  +S+SAGLDYPGVGPEH++LKD  RAEY  VTD EAL+AF   SR EGIIPALE++HALAY  KL P L+    VVVN SGRGDKDV T
Sbjct:  170 KDAVNEALRKWVENIEDTFYVMGSVVGPHPYPTMVRDFQRIIGDETKEQILKKEGKLPNYIIACVGGGSNSMGIFYPFVEDKSVKLIGVEAAGLGVDTDKHAASMAKGSVGVLHGMMTYLIQDDEGQILPVYSVSAGLDYPGVGPEHAYLKDTKRAEYTYVTDQEALDAFGYLSRCEGIIPALESSHALAYTMKLAPELSKEEIVVVNISGRGDKDVDT 388          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_STRGG (Tryptophan synthase beta chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.355e-79
Identity = 140/223 (62.78%), Postives = 174/223 (78.03%), Query Frame = -1
Query:  168 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 836
            KDA +EA RDWV NV+ THY+ G+VAGPHP+P MVRDFH VIG E RRQ LE+ G  PD  +ACVGGGSNA+GLFH F+ D+ VRL+G E AG G+++G+HAATL+ GE G+LHG+ SY+LQ+++GQI EP+SISAGLDYPG+GPEHS+LKD GR EY  VTDD A++A +  SR EGIIPA+E+AHALA    L   L     ++VN SGRGDKD+ TA +Y
Sbjct:  180 KDAINEAFRDWVANVDRTHYLFGTVAGPHPFPAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFIPDEGVRLVGCEPAGHGVETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHSYLKDVGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALDLGKELGKDGLILVNLSGRGDKDMDTAARY 402          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PSESH (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. phaseolicola GN=trpB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.355e-79
Identity = 144/224 (64.29%), Postives = 174/224 (77.68%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDA +EA+RDWVTNV+ T Y++G+VAGPHPYP MVRDF A+IGKET+ Q  EK G  PD LIACVGGGSNAMGLFH F++D  V +IGVEA G G+D+ KHAA+L+ G  GVLHG  +YLLQ+ DGQI +PHSISAGLDYPG+GPEH+FL +  R EY ++TDDEAL+AF +   LEGIIPALETAHALA   K    L D   +VV  SGRGDKD+QT + ++
Sbjct:  175 KDAMNEALRDWVTNVDDTFYLIGTVAGPHPYPAMVRDFQAIIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDASVEIIGVEAGGHGVDTDKHAASLNGGVPGVLHGNRTYLLQDGDGQITDPHSISAGLDYPGIGPEHAFLHEVKRVEYVSITDDEALDAFHQCCLLEGIIPALETAHALAEAMKRATNLRDDHLMVVCLSGRGDKDMQTVMNHM 398          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_NITMU (Tryptophan synthase beta chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=trpB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.355e-79
Identity = 140/222 (63.06%), Postives = 177/222 (79.73%), Query Frame = -1
Query:  171 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 836
            KDA +EA+RDWVTNV  T YI+G+VAGPHPYPMMVRDF A+IG+E   Q  E +G +PD LIACVGGGSNA+GLF+ ++ D  +R+IGVEAAG G+++ +HAATL+KG  GVLHG  +YL+Q+E+GQI+E HSISAGLDYPGVGPEH++LKD GRAEY+ +TD++ALEAF      EGIIPALE++HALAY  +L P L     ++VN SGRGDKD+ T  +
Sbjct:  172 KDALNEAMRDWVTNVADTFYIIGTVAGPHPYPMMVRDFQAIIGREAITQMQEDYGRQPDALIACVGGGSNAIGLFYPYL-DSSIRMIGVEAAGHGVETDQHAATLTKGRPGVLHGNRTYLIQDENGQIVETHSISAGLDYPGVGPEHAWLKDSGRAEYFGITDEQALEAFHALCHYEGIIPALESSHALAYAARLAPALTSDKLLLVNLSGRGDKDMPTVAR 392          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_CAUCR (Tryptophan synthase beta chain OS=Caulobacter crescentus GN=trpB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.355e-79
Identity = 144/224 (64.29%), Postives = 174/224 (77.68%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDA +EA+RDWVTNV  T+Y++G+ AGPHPYP+MVRDF +VIG E R Q LE  G  PD ++AC+GGGSNA+GLFH F+ D+ VRLIGVEAAG G+ + KHAA+L+ G  GVLHG  +YLLQ++DGQII+ HSISAGLDYPG+GPEHSFL D GRAEY + TD EALEAFK  S LEGIIPALE AHALA + ++   L  G  VV+N  GRGDKD+ T  + L
Sbjct:  179 KDAMNEAMRDWVTNVHDTYYLIGTAAGPHPYPVMVRDFQSVIGAEAREQILEMEGRLPDAVVACIGGGSNAIGLFHPFLGDEGVRLIGVEAAGHGVSTDKHAASLTGGRPGVLHGNRTYLLQDDDGQIIDAHSISAGLDYPGIGPEHSFLHDIGRAEYVSTTDTEALEAFKLCSTLEGIIPALEPAHALARVGEIAQELGKGKIVVMNLCGRGDKDIFTVAEAL 402          
The following BLAST results are available for this feature:
BLAST of CN184827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 451
Match NameE-valueIdentityDescription
TRPB_STRCO1.506e-7963.68Tryptophan synthase beta chain OS=Streptomyces coe... [more]
TRPB_OCHA41.506e-7962.05Tryptophan synthase beta chain OS=Ochrobactrum ant... [more]
TRPB_DECAR1.967e-7965.30Tryptophan synthase beta chain OS=Dechloromonas ar... [more]
TRPB_STRAW2.569e-7962.78Tryptophan synthase beta chain OS=Streptomyces ave... [more]
TRPB_CLOK52.569e-7964.38Tryptophan synthase beta chain OS=Clostridium kluy... [more]
TRPB_CLOK12.569e-7964.38Tryptophan synthase beta chain OS=Clostridium kluy... [more]
TRPB_STRGG3.355e-7962.78Tryptophan synthase beta chain OS=Streptomyces gri... [more]
TRPB_PSESH3.355e-7964.29Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_NITMU3.355e-7963.06Tryptophan synthase beta chain OS=Nitrosospira mul... [more]
TRPB_CAUCR3.355e-7964.29Tryptophan synthase beta chain OS=Caulobacter cres... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184827 ID=CN184827; Name=CN184827; organism=Citrus sinensis; type=EST; length=836bp
GAGGGTAATATATAAAGTTTTAACTCAAATTACATAAGATGGTTCTCACA
TCTCTGAAATAACTAATGATACAAAATTCAAAAACAGAAGCTCAAGCAAC
CCATTTATTTGTTTTCAGTAAATGAATCATATATTGTGGGTTACAAGCAT
TACCATCAAACTTGCAAATATTTGATCGCTGTCTGGACATCCTTGTCACC
TCTGCCACTGAAGTTAACCACAACCTTAGTACCATCAGCAAGAGTTGGGC
ATAGCTTCTCCAAATAAGCCAATGCATGAGCAGTCTCCAAAGCTGGGATT
ATACCCTCTAGCCGTGATGACCTCTTGAAAGCTTCCAATGCTTCATCATC
TGTGACATTATAGTACTCAGCACGCCCTTCATCTTTCAGAAAACTATGCT
CAGGTCCAACTCCAGGGTAATCTAAGCCTGCACTAATGGAGTGTGGCTCA
ATTATTTGCCCATCTTCATTCTGCAACAAATAGCTCAAAGCACCATGCAA
CACCCCAACTTCTCCTTTGGACAAGGTAGCAGCATGTTTGCCACTGTCTA
GACCAAAACCTGCTGCCTCCACACCAATCAACCTAACATCCTTGTCATTA
ACAAATTCGTGGAAGAGACCCATGGCATTTGAACCACCACCAACGCATGC
AATCAGCACATCTGGTTTCCCACCCCATTTCTCCAATGCTTGTCTTCTTG
TTTCTTTTCCAATCACAGCATGGAAATCTCTGACCATCATGGGGTACGGA
TGAGGCCCGGCAACAGATCCCAGAATGTAATGGGTAGTTTCCACATTAGT
CACCCAGTCCCGTATAGCTTCTGATGTAGCATCCTT
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