CN184827

Overview
NameCN184827
Unique NameCN184827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_THIDA (Tryptophan synthase beta chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=trpB PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.381e-79
Identity = 142/222 (63.96%), Postives = 173/222 (77.93%), Query Frame = -1
Query:  171 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 836
            KDA +EA+RDWVTNVE+T YILG+ AGPHPYPM+VRDF  VIG+E   Q  E  G +PD ++ACVGGGSNA+G+FH ++  ++VRLIGVEA G G+ SGKHAA L+ G  GVLHG  SYL+Q+E+GQIIE HS+SAGLDYPGVGPEHS+LKD GRAEY  + DDEAL AF    R EGIIPALE++HA+A  +KL PT+     ++VN SGRGDKD+ T  K
Sbjct:  172 KDALNEAMRDWVTNVESTFYILGTAAGPHPYPMLVRDFQCVIGRECIAQMPELVGRQPDAVVACVGGGSNAIGIFHPYIPHENVRLIGVEAGGSGVASGKHAAPLTAGTPGVLHGFRSYLMQDENGQIIETHSVSAGLDYPGVGPEHSYLKDAGRAEYVPINDDEALAAFHDLCRFEGIIPALESSHAVAQAKKLAPTMKKDQVILVNLSGRGDKDINTVAK 393          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_BACC3 (Tryptophan synthase beta chain OS=Bacillus cereus (strain 03BB102) GN=trpB PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.275e-78
Identity = 138/225 (61.33%), Postives = 181/225 (80.44%), Query Frame = -1
Query:  162 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 836
            KDA +EA+R WV++V  THYI+GSV GPHP+P +VRDF +VIG ET++Q  E  G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQNE+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  171 KDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEELEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_BACAH (Tryptophan synthase beta chain OS=Bacillus thuringiensis (strain Al Hakam) GN=trpB PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.275e-78
Identity = 138/225 (61.33%), Postives = 181/225 (80.44%), Query Frame = -1
Query:  162 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 836
            KDA +EA+R WV++V  THYI+GSV GPHP+P +VRDF +VIG ET++Q  E  G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQNE+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  171 KDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEELEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_BACCZ (Tryptophan synthase beta chain OS=Bacillus cereus (strain ZK / E33L) GN=trpB PE=3 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.665e-78
Identity = 138/225 (61.33%), Postives = 181/225 (80.44%), Query Frame = -1
Query:  162 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 836
            KDA +EA+R WV++V  THYI+GSV GPHP+P +VRDF +VIGKET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQNE+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  171 KDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPKMKEDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_ALKMQ (Tryptophan synthase beta chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=trpB PE=3 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.665e-78
Identity = 139/224 (62.05%), Postives = 173/224 (77.23%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDAT+EAIRDWV NV+ T+Y++GSV GPHPYP MVRDF  +IG E + Q LEK G  P+ L+ACVGGGSNAMGLF+ F  D+ V L GVEAAG G+++ +HAAT++KG +GV+HG ++YLLQ+E GQI   HSISAGLDYPG+GPEH++    GRA Y  +TD+EALEAF+  +RLEGIIPALE+AHA+AYL KL P       +V+N SGRGDKD+ T  K L
Sbjct:  170 KDATNEAIRDWVANVKDTYYVIGSVVGPHPYPTMVRDFQRIIGDEVKEQILEKEGRLPNYLVACVGGGSNAMGLFYPFYEDEAVALYGVEAAGLGVETDQHAATITKGSMGVIHGMMTYLLQDEQGQITPVHSISAGLDYPGIGPEHAYYHHTGRANYVAITDEEALEAFQLLTRLEGIIPALESAHAIAYLMKLAPKTKGDDIIVLNLSGRGDKDIHTISKLL 393          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRKO (Tryptophan synthase beta chain 1 OS=Pyrococcus kodakaraensis GN=trpB1 PE=3 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.665e-78
Identity = 139/217 (64.06%), Postives = 172/217 (79.26%), Query Frame = -1
Query:  186 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 836
            KDA +EA+RDWV   E +HY++GSV GP+PYP++VRDF +VIG+E R Q LE  G  PD ++ACVGGGSNAMG+F+ FVND+ VRLIGVEA G GL++G HAA+L+ GE+GV HG LSY LQNE+GQI   HS+SAGLDYPGVGPEH++LKD GRAEY  VTD+EAL AF   SR EGI+PALE+AHA+AY  K+ P +     ++VN SGRGDKD+
Sbjct:  165 KDAINEALRDWVATFEYSHYLIGSVVGPYPYPVIVRDFQSVIGREAREQILEAEGTLPDAVVACVGGGSNAMGIFYPFVNDR-VRLIGVEAGGKGLETGLHAASLNAGELGVFHGMLSYFLQNEEGQITPTHSVSAGLDYPGVGPEHAYLKDSGRAEYVTVTDEEALRAFHELSRTEGILPALESAHAVAYAMKIAPEMDKDEIIIVNLSGRGDKDL 380          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRFU (Tryptophan synthase beta chain 1 OS=Pyrococcus furiosus GN=trpB1 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.174e-78
Identity = 139/222 (62.61%), Postives = 173/222 (77.93%), Query Frame = -1
Query:  171 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 836
            KDA +EA+RDWV   E THY++GSV GPHPYP +VRDF +VIG+E + Q LE  G  PDV++ACVGGGSNAMG+F+ FVNDK V+L+GVEA G GL+SGKH+A+L+ G+VGV HG LSY LQ+E+GQI   HSI+ GLDYPGVGPEH++LK   RAEY  VTD+EAL+AF   SR EGIIPALE+AHA+AY  KL   ++    ++VN SGRGDKD+   +K
Sbjct:  162 KDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLK 383          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PSE14 (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpB PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.840e-78
Identity = 143/224 (63.84%), Postives = 173/224 (77.23%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDA +EA+RDWVTNV+ T Y++G+VAGPHPYP MVRDF A+IGKET+ Q  EK G  PD LIACVGGGSNAMGLFH F++D  V +IGVEA G G+D+ KHAA+L+ G  GVLHG  +YLLQ+ DGQI + HSISAGLDYPG+GPEH+FL +  R EY ++TDDEAL+AF +   LEGIIPALETAHALA   K    L D   +VV  SGRGDKD+QT + ++
Sbjct:  175 KDAMNEALRDWVTNVDDTFYLIGTVAGPHPYPAMVRDFQAIIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDASVEIIGVEAGGHGVDTDKHAASLNGGVPGVLHGNRTYLLQDGDGQITDAHSISAGLDYPGIGPEHAFLHEVKRVEYVSITDDEALDAFHQCCLLEGIIPALETAHALAEAMKRATNLRDDHLMVVCLSGRGDKDMQTVMNHM 398          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PSEU2 (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae (strain B728a) GN=trpB PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.709e-78
Identity = 142/224 (63.39%), Postives = 173/224 (77.23%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDA +EA+RDWVTNV+ T Y++G+VAGPHPYP MVRDF A+IGKET+ Q LEK G  PD L+ACVGGGSNAMGLFH F++D  V +IGVEA G G+ + KHAA+L+ G  GVLHG  +YLLQ+ DGQI + HSISAGLDYPG+GPEH+FL +  R EY ++TDDEAL+AF +   LEGIIPALETAHALA   K    L D   +VV  SGRGDKD+QT + ++
Sbjct:  175 KDAMNEALRDWVTNVDDTFYLIGTVAGPHPYPAMVRDFQAIIGKETKEQMLEKEGRLPDSLVACVGGGSNAMGLFHPFLDDASVEIIGVEAGGHGVSTDKHAASLNGGVPGVLHGNRTYLLQDGDGQITDAHSISAGLDYPGIGPEHAFLHEVKRVEYVSITDDEALDAFHQCCLLEGIIPALETAHALAEAMKRATNLRDDHLMVVCLSGRGDKDMQTVMNHM 398          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPU (Tryptophan synthase beta chain OS=Pseudomonas putida GN=trpB PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.709e-78
Identity = 141/224 (62.95%), Postives = 175/224 (78.12%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDA +EA+RDWVTNVE T Y++G+VAGPHPYP MVRDF ++IGKETR Q  EK G  PD L+ACVGGGSNAMGLFHEF+ +  V++IGVEA G G+ + KHAA+L+ G  GVLHG  +YLLQ+EDGQI + HSISAGLDYPG+GPEH++L +  R EY ++TDDEAL+AF  + RLEGIIPALE++HALA   K  P L     +VV  SGRGDKD+QT + ++
Sbjct:  175 KDAMNEALRDWVTNVEDTFYLIGTVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDEDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNHM 398          
The following BLAST results are available for this feature:
BLAST of CN184827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 451
Match NameE-valueIdentityDescription
TRPB_THIDA4.381e-7963.96Tryptophan synthase beta chain OS=Thiobacillus den... [more]
TRPB_BACC31.275e-7861.33Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACAH1.275e-7861.33Tryptophan synthase beta chain OS=Bacillus thuring... [more]
TRPB_BACCZ1.665e-7861.33Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_ALKMQ1.665e-7862.05Tryptophan synthase beta chain OS=Alkaliphilus met... [more]
TRPB1_PYRKO1.665e-7864.06Tryptophan synthase beta chain 1 OS=Pyrococcus kod... [more]
TRPB1_PYRFU2.174e-7862.61Tryptophan synthase beta chain 1 OS=Pyrococcus fur... [more]
TRPB_PSE142.840e-7863.84Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_PSEU23.709e-7863.39Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_PSEPU3.709e-7862.95Tryptophan synthase beta chain OS=Pseudomonas puti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184827 ID=CN184827; Name=CN184827; organism=Citrus sinensis; type=EST; length=836bp
GAGGGTAATATATAAAGTTTTAACTCAAATTACATAAGATGGTTCTCACA
TCTCTGAAATAACTAATGATACAAAATTCAAAAACAGAAGCTCAAGCAAC
CCATTTATTTGTTTTCAGTAAATGAATCATATATTGTGGGTTACAAGCAT
TACCATCAAACTTGCAAATATTTGATCGCTGTCTGGACATCCTTGTCACC
TCTGCCACTGAAGTTAACCACAACCTTAGTACCATCAGCAAGAGTTGGGC
ATAGCTTCTCCAAATAAGCCAATGCATGAGCAGTCTCCAAAGCTGGGATT
ATACCCTCTAGCCGTGATGACCTCTTGAAAGCTTCCAATGCTTCATCATC
TGTGACATTATAGTACTCAGCACGCCCTTCATCTTTCAGAAAACTATGCT
CAGGTCCAACTCCAGGGTAATCTAAGCCTGCACTAATGGAGTGTGGCTCA
ATTATTTGCCCATCTTCATTCTGCAACAAATAGCTCAAAGCACCATGCAA
CACCCCAACTTCTCCTTTGGACAAGGTAGCAGCATGTTTGCCACTGTCTA
GACCAAAACCTGCTGCCTCCACACCAATCAACCTAACATCCTTGTCATTA
ACAAATTCGTGGAAGAGACCCATGGCATTTGAACCACCACCAACGCATGC
AATCAGCACATCTGGTTTCCCACCCCATTTCTCCAATGCTTGTCTTCTTG
TTTCTTTTCCAATCACAGCATGGAAATCTCTGACCATCATGGGGTACGGA
TGAGGCCCGGCAACAGATCCCAGAATGTAATGGGTAGTTTCCACATTAGT
CACCCAGTCCCGTATAGCTTCTGATGTAGCATCCTT
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