CN184821

Overview
NameCN184821
Unique NameCN184821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.200e-56
Identity = 101/181 (55.80%), Postives = 123/181 (67.96%), Query Frame = -2
Query:  175 HETMGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGW-NSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNL 711
            HET GGWPDAP G YAWGYCY+++++             + G QY GRGPIQL+WN NY  CG+ L + LL  P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ A R+PGYG+ TNIINGGIECG+G  N+   +RIGF+  +C   G   G NLDCY Q P+G  L
Sbjct:  153 HETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.200e-56
Identity = 101/159 (63.52%), Postives = 121/159 (76.10%), Query Frame = -2
Query:  241 HETMGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCG 711
            HET GGWP AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +CG
Sbjct:  143 HETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.791e-56
Identity = 102/177 (57.63%), Postives = 125/177 (70.62%), Query Frame = -2
Query:  187 HETMGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 711
            HET GGWP AP G ++WGYC+ ++ +  SD        P  PG+ YYGRGPIQL++N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  A R PGYG+ TNI+NGG+ECG G +  VANRIGF+  +CG FGI  G NLDCYNQ P+
Sbjct:  153 HETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.976e-55
Identity = 99/178 (55.62%), Postives = 123/178 (69.10%), Query Frame = -2
Query:  184 HETMGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYG 711
            HET GGW  AP G Y+WGYCY R Q S G            PG+ Y+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D    R+PG+G+ TNIINGG+EC  G N+ + NRIGF+  +C   G+ PG+NLDC NQ P+G
Sbjct:   69 HETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.581e-55
Identity = 102/177 (57.63%), Postives = 124/177 (70.06%), Query Frame = -2
Query:  187 HETMGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 711
            HET GGW  AP G +AWGYC+ ++    +D        P  PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  A R PG+G+ TNIINGG+ECG G +S VA+RIGF+  +C   G+  GDNLDCYNQ P+
Sbjct:   89 HETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.749e-55
Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = -2
Query:  196 HETMGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQ 711
            HET GGWP AP G YAWGYC++ + +              PG+ YYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +A R+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC NQ
Sbjct:  144 HETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQ 316          
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.281e-54
Identity = 102/177 (57.63%), Postives = 124/177 (70.06%), Query Frame = -2
Query:  187 HETMGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 711
            HET GGW  AP G +AWGYC+ ++    SD        P  PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  A R+PG+G+ TNIINGGIECG G +S VA+RIGF+  +C   G+  G+NLDCY+Q P+
Sbjct:   89 HETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 211.846 bits (538), Expect = 2.853e-54
Identity = 100/177 (56.50%), Postives = 125/177 (70.62%), Query Frame = -2
Query:  187 HETMGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 711
            HET GGW  AP G +AWGYC+ ++    S+        P  PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  A R+PG+G+ TNI+NGGIECG G +S VA+RIGF+  +C   G+  G+NLDCY+Q P+
Sbjct:  141 HETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.357e-54
Identity = 100/177 (56.50%), Postives = 124/177 (70.06%), Query Frame = -2
Query:  187 HETMGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 711
            HET GGW  AP G +AWGYC+ ++    S+        P  PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  A R+PG+G+ TNI+NGGIECG G +S VA+RIGF+  +C    +  G+NLDCYNQ P+
Sbjct:  144 HETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CN184821 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.084e-53
Identity = 93/177 (52.54%), Postives = 126/177 (71.19%), Query Frame = -2
Query:  184 HETMGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVA-NRIGFFTTFCGKFGIQPGDNLDCYNQGPYG 711
            HET GGW  AP G +AWGYC + +++                 YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++ RLPGYG+ TNIINGG ECGKG+++  A +R+G++  +C  F +  GDN+ C +Q PYG
Sbjct:   90 HETTGGWATAPDGPFAWGYCRVNEITPSDPP------------YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
The following BLAST results are available for this feature:
BLAST of CN184821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_POPTR5.200e-5655.80Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI4_SOLTU5.200e-5663.52Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ6.791e-5657.63Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC1.976e-5555.62Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIC_SECCE2.581e-5557.63Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIX_PEA5.749e-5556.65Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_HORVU1.281e-5457.6326 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU2.853e-5456.5026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SECCE6.357e-5456.50Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI11_ORYSJ1.084e-5352.54Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184821 ID=CN184821; Name=CN184821; organism=Citrus sinensis; type=EST; length=715bp
GAGGATTGATCCATGTTGGATCAGTCTTATTTAATTTACCTACAATAAGA
GCGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGTGACATCTAAA
GTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGATCA
TGATGATCACATAGATTGTGCCATCAAATTAGGGCCATAAGGCCCTTGGT
TGTAGCAATCAAGATTGTCGCCAGGCTGAATCCCAAACTTGCCACAGAAA
GTGGTAAAGAACCCAATACGGTTAGCTACAAAGCTATTCCAACCTTTGCC
ACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCGGAA
GCCGGCTGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATAATG
ACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGAT
TGCTGACTTGAATGATAGTACTGGATCAGTGGCAAGAAGGTCTGGATTGT
TCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTAATTGCAATTC
CAAGTGAGTTGAATTGGACCTCGGCCATAGTATTGCCCTGGCAAGGGACA
TGGACAGTAAGGATAACAGTAGTCGGACCCATGGCTAACTTGCCTAATAT
AGCAATATCCCCAAGCATATTCTCCACCAGGTGCATCGGGCCATCCCCCC
ATAGTTTCATGGCCA
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