CN184817

Overview
NameCN184817
Unique NameCN184817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.907e-54
Identity = 105/190 (55.26%), Postives = 137/190 (72.11%), Query Frame = -3
Query:  103 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGF 672
            +IN AVFP LQGGPHNH I+ +AVALKQ  TP ++ Y  QVL N+   A +LLERGY LVSGGT+NHLVLV+LR KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V +F +  V + L++K   K  KL+DF + L+ D      +++LR +V+ +A+ FP  GF
Sbjct:  314 RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVK--RKTAKLQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 6.664e-54
Identity = 106/194 (54.64%), Postives = 142/194 (73.20%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTK--LKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            +++ IN AVFPGLQGGPHNH I+G+AVALKQ  TPE++AYQ QV++N    A++L+  GY +V+GG++NHL+LV+LR+KG DG R EKVLE+  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF+KVA F +  ++L L+I+ D  G K  LK+F+  L   E     ++ LR +VE +A  FP  G
Sbjct:  288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.485e-53
Identity = 106/191 (55.50%), Postives = 143/191 (74.87%), Query Frame = -3
Query:  106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESI--QSE-ISNLRDKVEVYAKRFPTVG 669
            IN +VFPG QGGPHNHTIS LAVALKQ KTPE+  YQ+QV+SN+  F   LL+RG++LVSGGT+NHL+L+NL N GIDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF E+DF+KVAE+ + AVKL++ +K   +    KD  + L S + +  QSE +  L ++V  +   FP  G
Sbjct:  294 INFSVFPGHQGGPHNHTISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQ-ESADAKDVRSKLNSFKQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53
Identity = 105/193 (54.40%), Postives = 140/193 (72.54%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDT-KGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            +++ IN AVFPGLQGGPHNH I+G+AVALKQ  T E+K YQ QV++N    +++L E GY +V+GG++NHL+LV+LR+KG DG R EKVLE+  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF+KVA F +  ++L L+I+ DT     LK+F   L  D+  Q  +  LR+KVE +A  FP  G
Sbjct:  288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDK-YQGAVQALREKVESFASLFPLPG 479          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.532e-53
Identity = 101/192 (52.60%), Postives = 138/192 (71.88%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            ++ KIN AVFPGLQGGPHNHTI+G+AVALKQ  + ++  Y EQ+L N+   A+ L + GY L +GGT+NHL+LV+LR  G++G+R E +L+  HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DFEKV +F +  V++A K   +  G  LKDF A   ++E  + E++ L  +VE ++ +F   G
Sbjct:  317 LEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.320e-53
Identity = 104/193 (53.89%), Postives = 141/193 (73.06%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDT-KGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            +++ IN AVFPGLQGGPHNH I+G+AVALKQ  T E+K YQ QV++N    +++L E GY +V+GG++NHL+LV+LR+KG DG R EKVLE+  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF+KVA F +  ++L L+I+ DT     LK+F   L  D+  Q+ +  LR++VE +A  FP  G
Sbjct:  288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDK-YQAAVQALREEVESFASLFPLPG 479          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.964e-53
Identity = 102/194 (52.58%), Postives = 143/194 (73.71%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATL--MSDESIQSEISNLRDKVEVYAKRFPTVG 681
            ++ KIN  VFPG QGGPHNHTIS LAVALKQ   PEY  YQ++V+SN+  FA +L+ +G+ LVS GT+ HL+LV+LR++ IDG+RVE VLE  +IAANKNTVPGDVSA+ P G+R+GTPA+T+RGF  E+F+KVAEF + AV +A+++K   +G   K+ +A+   ++DES   ++  L  +V  +  ++P  G
Sbjct:  300 LERKINFLVFPGHQGGPHNHTISALAVALKQCTEPEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADES--DKVKQLDKEVVSWVSKYPVPG 491          

HSP 2 Score: 23.8682 bits (50), Expect = 7.964e-53
Identity = 8/21 (38.10%), Postives = 16/21 (76.19%), Query Frame = -1
Query:  672 RKGVKEINKQGQEVMYAL*RQ 734
            RKG++++  +G+E+ Y L R+
Sbjct:  283 RKGIRKVTTKGKEIPYELERK 303          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.800e-52
Identity = 100/194 (51.55%), Postives = 140/194 (72.16%), Query Frame = -3
Query:  100 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFE 681
            ++ KIN AVFPGLQGGPHNHTI+G+AVAL+Q  + ++  Y EQVL N+   A+ + + GY L +GGT+NHL+LV+LR  G++G+R E VL+  HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DFEKV +F +  V++A K   +  G  LKDF +   ++E  + ++++L  +VE ++ +F   G E
Sbjct:  313 LEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPGNE 505          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.905e-52
Identity = 109/206 (52.91%), Postives = 147/206 (71.36%), Query Frame = -3
Query:  115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLER------GYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKI----------KGDTK-GTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681
            ++T IN +VFPG QGGPHNHTI+ LAVALKQ +TPE++AYQ QVL+N++  A  L E       GY +VSGGT+NHLVL++L+ +GIDGSRVE+VLE V +AANKNTVPGD SA+ PGG+R+GTPA+T+RGF EEDF +VA+  + AV +A++I          KG+ K   ++K F+  L + E+   EI  LR +VE +   +P
Sbjct:  316 LETPINASVFPGHQGGPHNHTIAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGET-DPEIVQLRSEVESWVGTYP 520          

HSP 2 Score: 24.6386 bits (52), Expect = 3.905e-52
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = -1
Query:  681 RKGVKEINKQGQEVMYAL 734
            R+GV+  NK+G+E +Y L
Sbjct:  299 RRGVRRTNKKGEEELYNL 316          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 7.213e-51
Identity = 97/192 (50.52%), Postives = 137/192 (71.35%), Query Frame = -3
Query:  106 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESI---QSEISNLRDKVEVYAKRFPTVG 672
            +IN +VFPG QGGPHNHTIS LAVALKQ  TPE+K YQ  V+ N+  F + L+++G++LVSGGT+ HL+L+NL N GIDG+R+E +LE+++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  ++F +VA + + AVKLA+ IK   +    KD  + L S + +     ++  L D+V  +   FP  G
Sbjct:  306 RINFSVFPGHQGGPHNHTISALAVALKQAATPEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQ-ESPDAKDARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496          

HSP 2 Score: 27.335 bits (59), Expect = 7.213e-51
Identity = 10/18 (55.56%), Postives = 16/18 (88.89%), Query Frame = -1
Query:  681 RKGVKEINKQGQEVMYAL 734
            RKGV+++ K+G+EV+Y L
Sbjct:  286 RKGVRKVTKKGKEVLYDL 303          
The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_RABIT3.907e-5455.26Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_BOVIN6.664e-5454.64Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYM_CANGA1.485e-5355.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB1.939e-5354.40Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_CAEBR2.532e-5352.60Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_HUMAN4.320e-5353.89Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYM_CANAL7.964e-5352.58Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEEL2.800e-5251.55Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_NEUCR3.905e-5252.91Putative serine hydroxymethyltransferase, mitochon... [more]
GLYM_KLULA7.213e-5150.52Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bp
GAGGCTATTTTATATGCTTTCAAGAAACAAATATATGACATACCTTGCTG
CATAAATATCATTAATCATCCTTCAGTTCTTGTATTTCATTGTTTCTTTC
TCAAAACCAACAGTAGGAAATCGTTTTGCGTACACCTCGACTTTGTCTCG
GAGGTTTGAAATCTCAGATTGAATGCTTTCATCTGACATCAAAGTTGCTA
CAAAATCCTTCAACTTTGTTCCTTTAGTATCACCCTTGATCTTTAATGCC
AACTTCACAGCTGCATTGAAGAACTCAGCGACCTTTTCAAAATCTTCCTC
AACAAACCCCCTAGATGTGAGGGCTGGGGTTCCCATGCGGATGCCACCAG
GAACCATAGCAGACACGTCACCAGGAACAGTGTTTTTGTTGGCTGCAATA
TGAACTGATTCCAAAACCTTTTCAACTCTTGATCCGTCAATACCCTTGTT
TCTCAAGTTCACCAAGACTAGATGGTTCTCAGTTCCACCAGATACCAGAT
CATAACCTCTCTCTAGCAAACTCTGTGCAAACTTTGAAGAATTGCTGAGA
ACTTGCTCCTGGTAGGCCTTGTATTCAGGGGTCTTTACCTGCTTAAGTGC
GACAGCTAATCCTGATATGGTGTGATTATGTGGACCACCTTGAAGTCCAG
GGAAAACTGCCTGATTAATTTTTGTCTTCATAGGGCATACATCACTTCTT
GTCCTTGTTTATTAATCTCTTTAACCCCCTTCCT
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