CN184817
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2) HSP 1 Score: 211.46 bits (537), Expect = 3.907e-54 Identity = 105/190 (55.26%), Postives = 137/190 (72.11%), Query Frame = -3 Query: 103 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGF 672 +IN AVFP LQGGPHNH I+ +AVALKQ TP ++ Y QVL N+ A +LLERGY LVSGGT+NHLVLV+LR KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V +F + V + L++K K KL+DF + L+ D +++LR +V+ +A+ FP GF Sbjct: 314 RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVK--RKTAKLQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3) HSP 1 Score: 210.69 bits (535), Expect = 6.664e-54 Identity = 106/194 (54.64%), Postives = 142/194 (73.20%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTK--LKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681 +++ IN AVFPGLQGGPHNH I+G+AVALKQ TPE++AYQ QV++N A++L+ GY +V+GG++NHL+LV+LR+KG DG R EKVLE+ IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF+KVA F + ++L L+I+ D G K LK+F+ L E ++ LR +VE +A FP G Sbjct: 288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.485e-53 Identity = 106/191 (55.50%), Postives = 143/191 (74.87%), Query Frame = -3 Query: 106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESI--QSE-ISNLRDKVEVYAKRFPTVG 669 IN +VFPG QGGPHNHTIS LAVALKQ KTPE+ YQ+QV+SN+ F LL+RG++LVSGGT+NHL+L+NL N GIDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF E+DF+KVAE+ + AVKL++ +K + KD + L S + + QSE + L ++V + FP G Sbjct: 294 INFSVFPGHQGGPHNHTISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQ-ESADAKDVRSKLNSFKQLCDQSEPVQKLAEEVSSWVGTFPVPG 483
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53 Identity = 105/193 (54.40%), Postives = 140/193 (72.54%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDT-KGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681 +++ IN AVFPGLQGGPHNH I+G+AVALKQ T E+K YQ QV++N +++L E GY +V+GG++NHL+LV+LR+KG DG R EKVLE+ IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF+KVA F + ++L L+I+ DT LK+F L D+ Q + LR+KVE +A FP G Sbjct: 288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDK-YQGAVQALREKVESFASLFPLPG 479
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3) HSP 1 Score: 208.764 bits (530), Expect = 2.532e-53 Identity = 101/192 (52.60%), Postives = 138/192 (71.88%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681 ++ KIN AVFPGLQGGPHNHTI+G+AVALKQ + ++ Y EQ+L N+ A+ L + GY L +GGT+NHL+LV+LR G++G+R E +L+ HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DFEKV +F + V++A K + G LKDF A ++E + E++ L +VE ++ +F G Sbjct: 317 LEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 4.320e-53 Identity = 104/193 (53.89%), Postives = 141/193 (73.06%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDT-KGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681 +++ IN AVFPGLQGGPHNH I+G+AVALKQ T E+K YQ QV++N +++L E GY +V+GG++NHL+LV+LR+KG DG R EKVLE+ IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF+KVA F + ++L L+I+ DT LK+F L D+ Q+ + LR++VE +A FP G Sbjct: 288 LESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDK-YQAAVQALREEVESFASLFPLPG 479
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 7.964e-53 Identity = 102/194 (52.58%), Postives = 143/194 (73.71%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATL--MSDESIQSEISNLRDKVEVYAKRFPTVG 681 ++ KIN VFPG QGGPHNHTIS LAVALKQ PEY YQ++V+SN+ FA +L+ +G+ LVS GT+ HL+LV+LR++ IDG+RVE VLE +IAANKNTVPGDVSA+ P G+R+GTPA+T+RGF E+F+KVAEF + AV +A+++K +G K+ +A+ ++DES ++ L +V + ++P G Sbjct: 300 LERKINFLVFPGHQGGPHNHTISALAVALKQCTEPEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADES--DKVKQLDKEVVSWVSKYPVPG 491 HSP 2 Score: 23.8682 bits (50), Expect = 7.964e-53 Identity = 8/21 (38.10%), Postives = 16/21 (76.19%), Query Frame = -1 Query: 672 RKGVKEINKQGQEVMYAL*RQ 734 RKG++++ +G+E+ Y L R+ Sbjct: 283 RKGIRKVTTKGKEIPYELERK 303
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2) HSP 1 Score: 205.297 bits (521), Expect = 2.800e-52 Identity = 100/194 (51.55%), Postives = 140/194 (72.16%), Query Frame = -3 Query: 100 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFE 681 ++ KIN AVFPGLQGGPHNHTI+G+AVAL+Q + ++ Y EQVL N+ A+ + + GY L +GGT+NHL+LV+LR G++G+R E VL+ HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DFEKV +F + V++A K + G LKDF + ++E + ++++L +VE ++ +F G E Sbjct: 313 LEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPGNE 505
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 3.905e-52 Identity = 109/206 (52.91%), Postives = 147/206 (71.36%), Query Frame = -3 Query: 115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLER------GYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKI----------KGDTK-GTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681 ++T IN +VFPG QGGPHNHTI+ LAVALKQ +TPE++AYQ QVL+N++ A L E GY +VSGGT+NHLVL++L+ +GIDGSRVE+VLE V +AANKNTVPGD SA+ PGG+R+GTPA+T+RGF EEDF +VA+ + AV +A++I KG+ K ++K F+ L + E+ EI LR +VE + +P Sbjct: 316 LETPINASVFPGHQGGPHNHTIAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGET-DPEIVQLRSEVESWVGTYP 520 HSP 2 Score: 24.6386 bits (52), Expect = 3.905e-52 Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = -1 Query: 681 RKGVKEINKQGQEVMYAL 734 R+GV+ NK+G+E +Y L Sbjct: 299 RRGVRRTNKKGEEELYNL 316
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 7.213e-51 Identity = 97/192 (50.52%), Postives = 137/192 (71.35%), Query Frame = -3 Query: 106 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESI---QSEISNLRDKVEVYAKRFPTVG 672 +IN +VFPG QGGPHNHTIS LAVALKQ TPE+K YQ V+ N+ F + L+++G++LVSGGT+ HL+L+NL N GIDG+R+E +LE+++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF ++F +VA + + AVKLA+ IK + KD + L S + + ++ L D+V + FP G Sbjct: 306 RINFSVFPGHQGGPHNHTISALAVALKQAATPEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQ-ESPDAKDARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496 HSP 2 Score: 27.335 bits (59), Expect = 7.213e-51 Identity = 10/18 (55.56%), Postives = 16/18 (88.89%), Query Frame = -1 Query: 681 RKGVKEINKQGQEVMYAL 734 RKGV+++ K+G+EV+Y L Sbjct: 286 RKGVRKVTKKGKEVLYDL 303 The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bpback to top |