CN184817

Overview
NameCN184817
Unique NameCN184817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_AMOA5 (Serine hydroxymethyltransferase OS=Amoebophilus asiaticus (strain 5a2) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.223e-31
Identity = 67/151 (44.37%), Postives = 100/151 (66.23%), Query Frame = -3
Query:  253 TRSDVCPMKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVP-GDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVK 702
            T+  +  M T ++ +VFPG+QGGP  H I+  A+A ++  + +Y  Y  QV  N+ + AQS ++RGY++VSGGT+NHL+L++LRNKGI G   E+ L    I  NKN VP  D S ++  GIR+GTPA+T+RG  E D E++A + +  +K
Sbjct:  247 TKGKLKSMSTLLDASVFPGIQGGPLEHIIAAKAIAFQEAMSDDYFNYILQVQKNTRQLAQSFVKRGYNIVSGGTDNHLILIDLRNKGITGKLAEEALIKASITLNKNMVPFDDQSPLITSGIRIGTPAVTTRGMQETDMEQIAAWIDDVLK 397          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-31
Identity = 65/133 (48.87%), Postives = 97/133 (72.93%), Query Frame = -3
Query:  277 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVA 672
            KI++AVFPG+QGGP  H I+  AV  K+  TPE+KAYQ+ +++N++  A++L+E+G  +VSGGT+NHL+LV++R KG++G   E +LES++I  NKN +P D     V  GIR+GTPA+TSR    +D  ++A
Sbjct:  249 KIDKAVFPGIQGGPLMHVIAAKAVCFKEALTPEFKAYQQDIVNNAAILAKALMEQGLRVVSGGTDNHLMLVDVRPKGLNGRDAEAILESINITVNKNAIPFDPEKPTVTSGIRVGTPAVTSRALKGDDMRELA 381          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_POLNS (Serine hydroxymethyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-31
Identity = 74/186 (39.78%), Postives = 109/186 (58.60%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            IN AVFPGLQGGP  H I+  AVA K+   P +K YQ+QV++N+   A++L+ RG  +VSGGT++H++LV+LR K + G   E+VL   HI  NKN +P D    MV  GIR+G+PA+T+RGF E +  +V                        +F+A ++ + +  + I+ +R +V    KRFP
Sbjct:  249 INFAVFPGLQGGPLMHVIAAKAVAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKSMTGKEAERVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEARQVG-----------------------NFIADVLDNPNDPANIAKVRAQVAELTKRFP 411          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ONYPE (Serine hydroxymethyltransferase OS=Onion yellows phytoplasma GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-31
Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = -3
Query:  256 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKG--IDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 672
            KIN+ +FPG+QGGP  HTI+  AVA ++   P +K YQ+QV+ N++ FA++  ++GY +VSGGT+NHL L+++++K     GS++  +LE ++I  NKNT+P D     V  GIR+GTPA+T+ GF E DF  VA+  + A+
Sbjct:  250 KINRGIFPGIQGGPCIHTIAAKAVAFQEAMMPSFKEYQKQVIKNANTFAKAFQQKGYRIVSGGTDNHLFLIDVKHKNPEFTGSKIANMLEKINIVVNKNTIPFDQEKPFVTSGIRIGTPAMTTVGFRENDFILVADLMDKAI 391          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_LYSSC (Serine hydroxymethyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-31
Identity = 67/141 (47.52%), Postives = 95/141 (67.38%), Query Frame = -3
Query:  253 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVK 672
            K+N++VFPG+QGGP  H I+  AVA  +V  PE+K Y +Q+  N+   A+ L+  G ++VSGGT+NHL+L+N+++ G+ G   E  L+ V I  NKNT+P D  S  V  GIR+GTPA+TSRGF EED ++V     A +K
Sbjct:  247 KLNKSVFPGIQGGPLMHVIAAKAVAFGEVLQPEFKDYAKQIKLNAKALAEVLIAEGVEIVSGGTDNHLLLLNVKSLGLTGKVAEHALDEVGITTNKNTIPYDTESPFVTSGIRIGTPAVTSRGFKEEDMKEVGAIIAAVLK 387          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_IDILO (Serine hydroxymethyltransferase OS=Idiomarina loihiensis GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-31
Identity = 76/198 (38.38%), Postives = 113/198 (57.07%), Query Frame = -3
Query:  106 SDVCPMKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 696
            SD   +  K+N AVFPG QGGP  H I+G AVA ++   PE+K YQ+QVL N++   +++  RGY +VS GT+NHL LV+L +K I G   +  L +  I  NKN VP D  S  V  G+R+GTPA+T RGF E + E+VA                       +++  ++ D + +S+I+ +R++V+    +FP  G
Sbjct:  244 SDDEKLHKKLNSAVFPGNQGGPLCHVIAGKAVAFQEALQPEFKDYQKQVLVNANAMVKTMQARGYKIVSNGTQNHLFLVDLIDKDITGKDADAALGNAFITVNKNAVPNDPRSPFVTSGLRLGTPAITRRGFKEAEAEQVA-----------------------NWICDVLDDIADESKINQVREQVKALCAKFPVYG 418          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_CAMFF (Serine hydroxymethyltransferase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-31
Identity = 72/156 (46.15%), Postives = 97/156 (62.18%), Query Frame = -3
Query:  208 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLK 672
            KIN ++FPG+QGGP  H I+G AV  K   + E+K Y +QV +N+ K  + L+ RGYDLVSGGT+NHLVLV+  NK   G   +  L +  I  NKNTVPG+  S  +  GIR+G+PALT+RG  E +FE +A   N    +   I   +K  K+K
Sbjct:  244 KINSSIFPGIQGGPLMHVIAGKAVGFKHNLSDEWKVYAKQVKTNAKKLGEVLINRGYDLVSGGTDNHLVLVSFLNKEFSGKDADIALGNAGITVNKNTVPGETRSPFITSGIRVGSPALTARGMKESEFELIA---NRIADVLDDIDNSSKQEKIK 396          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_THEM4 (Serine hydroxymethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 74/181 (40.88%), Postives = 108/181 (59.67%), Query Frame = -3
Query:  130 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVY 669
            IN+++FPG+QGGP  H I+  AV  K+  T E+KAYQ QV+ N+ K A+ L +RG  +VSGGT+ HL+LV+L    + G   E  L   H+  NKNT+P +  S  V  GIR+GTPALT+RG  E + E++AE     VK+   +K D +G      V      E +Q ++ +L ++  +Y
Sbjct:  248 INKSIFPGIQGGPLMHVIAAKAVCFKEALTDEFKAYQNQVVKNAKKLAEELEKRGLRIVSGGTDTHLMLVDLNPLNVTGKAAEIALGKCHVTVNKNTIPNETRSPFVASGIRLGTPALTTRGMKESEMEEIAELI---VKVLENVK-DEEGNVDDSIV------EDVQKKVRDLCERFPLY 418          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_MARAV (Serine hydroxymethyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 77/193 (39.90%), Postives = 110/193 (56.99%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            ++ K+N AVFPG QGGP  H I+  AV  K+  + E+KAYQ+QV+ N++  A+  +ERG+D+VSGGT+NHL LV+L  + I G   +  L   HI  NKN VP D  S  V  G+R+GTPA+T+RGF E +   +A +                   + D +  L  DE++ S +   R++VE    RFP  G
Sbjct:  248 LQKKLNSAVFPGGQGGPLMHVIAAKAVCFKEAMSDEFKAYQQQVVKNAAAMAEVFIERGFDVVSGGTKNHLFLVSLIKQDITGKDADAALGKAHITVNKNAVPNDPRSPFVTSGLRIGTPAVTTRGFKEAECRNLAGW-------------------MCDILDNL-EDEAVNSRV---REQVEAVCARFPVYG 417          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_LAWIP (Serine hydroxymethyltransferase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 72/186 (38.71%), Postives = 110/186 (59.14%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            IN  +FPG+QGGP  H I+  AVAL +     +  YQ+QV+ N+   A+ LL+ G++LVSGGT+NHL+L++L NK I G   EK L+   I  NKNTVP + +S  V  GIR+GTPALT+RG  E+D  KVA                       +++ T +++ + ++++  +  +V  +A++FP
Sbjct:  246 INSQIFPGIQGGPLMHVIAAKAVALGEASKASFVTYQKQVILNAKTLAKQLLDAGFNLVSGGTDNHLLLIDLTNKKITGKDAEKALDQAGITVNKNTVPFETLSPFVTSGIRIGTPALTTRGLCEQDMIKVA-----------------------NWIVTALNNINNETQLKEINKEVTYFARQFP 408          
The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_AMOA51.223e-3144.37Serine hydroxymethyltransferase OS=Amoebophilus as... [more]
GLYA_SYNWW1.597e-3148.87Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_POLNS1.597e-3139.78Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_ONYPE1.597e-3145.77Serine hydroxymethyltransferase OS=Onion yellows p... [more]
GLYA_LYSSC1.597e-3147.52Serine hydroxymethyltransferase OS=Lysinibacillus ... [more]
GLYA_IDILO1.597e-3138.38Serine hydroxymethyltransferase OS=Idiomarina loih... [more]
GLYA_CAMFF1.597e-3146.15Serine hydroxymethyltransferase OS=Campylobacter f... [more]
GLYA_THEM42.086e-3140.88Serine hydroxymethyltransferase OS=Thermosipho mel... [more]
GLYA_MARAV2.086e-3139.90Serine hydroxymethyltransferase OS=Marinobacter aq... [more]
GLYA_LAWIP2.086e-3138.71Serine hydroxymethyltransferase OS=Lawsonia intrac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bp
GAGGCTATTTTATATGCTTTCAAGAAACAAATATATGACATACCTTGCTG
CATAAATATCATTAATCATCCTTCAGTTCTTGTATTTCATTGTTTCTTTC
TCAAAACCAACAGTAGGAAATCGTTTTGCGTACACCTCGACTTTGTCTCG
GAGGTTTGAAATCTCAGATTGAATGCTTTCATCTGACATCAAAGTTGCTA
CAAAATCCTTCAACTTTGTTCCTTTAGTATCACCCTTGATCTTTAATGCC
AACTTCACAGCTGCATTGAAGAACTCAGCGACCTTTTCAAAATCTTCCTC
AACAAACCCCCTAGATGTGAGGGCTGGGGTTCCCATGCGGATGCCACCAG
GAACCATAGCAGACACGTCACCAGGAACAGTGTTTTTGTTGGCTGCAATA
TGAACTGATTCCAAAACCTTTTCAACTCTTGATCCGTCAATACCCTTGTT
TCTCAAGTTCACCAAGACTAGATGGTTCTCAGTTCCACCAGATACCAGAT
CATAACCTCTCTCTAGCAAACTCTGTGCAAACTTTGAAGAATTGCTGAGA
ACTTGCTCCTGGTAGGCCTTGTATTCAGGGGTCTTTACCTGCTTAAGTGC
GACAGCTAATCCTGATATGGTGTGATTATGTGGACCACCTTGAAGTCCAG
GGAAAACTGCCTGATTAATTTTTGTCTTCATAGGGCATACATCACTTCTT
GTCCTTGTTTATTAATCTCTTTAACCCCCTTCCT
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