CN184817

Overview
NameCN184817
Unique NameCN184817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.536e-50
Identity = 104/191 (54.45%), Postives = 138/191 (72.25%), Query Frame = -3
Query:  118 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKG---DTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRF 681
            ++ KIN +VFPG QGGPHNHTI+ LAVAL Q KTPE+  YQ+ VLSN+   A + + RGY LVSGGT+ HLVLV+L +KG+DG+RVE++LE V+I+ANKNTVPGD SA++P G+R+GTPA T+RGF E+DFE+V E  +  V L  KI         +K +DF A  + D S  SEI+ L+ +V  +A +F
Sbjct:  279 LEDKINFSVFPGHQGGPHNHTITALAVALGQAKTPEFYQYQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDFKA-YVGDGSKFSEIAKLKKEVITWAGKF 468          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.455e-49
Identity = 98/191 (51.31%), Postives = 136/191 (71.20%), Query Frame = -3
Query:  115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGD--TKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681
            ++ KIN +VFPG QGGPHNHTI+ LAVALKQ  +PE+K YQ++V++N+    + L E GY LVS GT++H+VLV+LR  G+DG+RVE +LE ++I  NKN VPGD SA+ PGG+R+GTPA+TSRGF E DFEKVA F + AVKL  +I+     +  K KDF A + + +     I+ L+ ++  ++  FP
Sbjct:  280 LEDKINFSVFPGHQGGPHNHTITALAVALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANKQKDFKAKIATSDI--PRINELKQEIAAWSNTFP 468          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 6.526e-49
Identity = 94/195 (48.21%), Postives = 139/195 (71.28%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESI---QSEISNLRDKVEVYAKRFPTVG 681
            ++ KIN +VFPG QGGPHNHTI  +AVALKQ  +PE+K YQ++++ NS  FAQ L + GY LVSGGT+NHL++++L    +DG+RVE +L +++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  E+F +VA++ ++AVKLA  +K     TKL D  + L   + +    SE++ L  ++  +  ++P  G
Sbjct:  295 LEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKL-DARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488          

HSP 2 Score: 26.1794 bits (56), Expect = 6.526e-49
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = -1
Query:  681 RKGVKEINKQGQEVMYAL 734
            RKG+K + K+G+E+ Y L
Sbjct:  278 RKGIKSVTKKGKEIPYEL 295          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.083e-48
Identity = 95/193 (49.22%), Postives = 133/193 (68.91%), Query Frame = -3
Query:  106 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKG----DTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 672
            +IN +VFP  QGGPHNHTIS LAVALKQ  TPE+K YQ  V+ N+  F + L +RG+ LVSGGT+ HL+L++L   GIDGSR+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF   +F +VA + N AVKLA+ +K     D K  K +  +A   S  +   +++ L ++V  +  ++P  G
Sbjct:  305 RINFSVFPAHQGGPHNHTISALAVALKQAATPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQEPVDAKDAKTR--LAHFKSFCAESEQVTKLANEVADWVAQYPVPG 495          

HSP 2 Score: 26.9498 bits (58), Expect = 7.083e-48
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = -1
Query:  681 RKGVKEINKQGQEVMYAL 734
            RKG++++ K+G E+MY L
Sbjct:  285 RKGIRKVTKKGTEIMYDL 302          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.590e-47
Identity = 93/191 (48.69%), Postives = 131/191 (68.59%), Query Frame = -3
Query:  115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGD--TKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681
            ++  IN +VFPG QGGPHNHTI+ LA ALKQ  TPE+K YQEQVL N+        ++GY LVS GT++H+VLV+L++K IDG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF+K+  + + AV  A +++        KLKDF   +  D     ++  +RD++  +A  FP
Sbjct:  280 LENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGD---SEKLKAVRDEIYQWAGSFP 467          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.916e-46
Identity = 91/191 (47.64%), Postives = 129/191 (67.54%), Query Frame = -3
Query:  115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGD--TKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681
            ++  IN +VFPG QGGPHNHTI+ LA ALKQ  TPE+K YQ QVL N+          GY LVS GT++H+VLV+LR KG+DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + + AVK A + +     +  KLKDF A +   + I  +++ L+ ++  +   +P
Sbjct:  279 LENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALENEFQTLGYRLVSNGTDSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKV---DEIADQLAPLKKEIYDWTAEYP 466          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 92/191 (48.17%), Postives = 130/191 (68.06%), Query Frame = -3
Query:  115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGD--TKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681
            ++ KIN +VFPG QGGPHNHTI+ LAVALKQ + P YK YQ QV+ N+    +   +RGY L + GT++H+VLV++++KG+DG+R E+VLE ++I  NKNTVP D SA  P GIR+GTPA+T+RGF E+DF +V ++ + A+  A  ++ +      KLKDF A L   E    E+  L+ +V  +A  FP
Sbjct:  273 LEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQ-YPELVQLQKEVAEWASSFP 462          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 92/187 (49.20%), Postives = 127/187 (67.91%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGD--TKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            IN +VFPG QGGPHNHTIS LA ALKQ  TPE++ YQE VL N+        +  Y LVS GT++H+VLV+LR KG+DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + N AV++A  I+     +  +LKDF A +   E    EI+ L  ++  + + +P
Sbjct:  283 INFSVFPGHQGGPHNHTISALATALKQATTPEFREYQELVLKNAKVLETEFKKLNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKV---EGGTDEIAQLAQEIYSWTEEYP 466          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.315e-45
Identity = 93/186 (50.00%), Postives = 128/186 (68.82%), Query Frame = -3
Query:  130 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGD--TKGTKLKDFVATLMSDESIQSEISNLRDKVEVY 681
            ++  IN +VFPG QGGPHNHTI+ LA ALKQ  TPE+K YQ QVL N+          GY LVS GT++H+VLV+LR KG+DG+RVE + E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++ ++ N AV+ A +++        +LKDF A +  DE   S++ N   K E+Y
Sbjct:  279 LENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALESEFKNLGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKV--DEG--SDVLNTWKK-EIY 459          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.376e-43
Identity = 85/192 (44.27%), Postives = 128/192 (66.67%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            ++ +IN AVFP  QGGPH +TI+G+AVALK+  +P+++ Y +QV  NS    + L +RGY LV+ GT+NHLVL +LR +GI GS++EK  +  HI  NKN V GD +A+ PGG+R+G PALTSRG  E+DF KV +F +  VK++L I+    G K+ DF   +  ++    ++  +R +V+ ++ +F   G
Sbjct:  293 LENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKV-GKKMPDFQRAIADNQ----DLKQIRQEVKEFSTKFGMPG 479          
The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_SCHPO1.536e-5054.45Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_NEUCR6.455e-4951.31Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_YEAST6.526e-4948.21Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ASHGO7.083e-4849.22Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANAL1.590e-4748.69Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_CANGA3.916e-4647.64Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYD_SCHPO1.943e-4548.17Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_ASHGO1.943e-4549.20Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_YEAST3.315e-4550.00Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYC2_DICDI2.376e-4344.27Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bp
GAGGCTATTTTATATGCTTTCAAGAAACAAATATATGACATACCTTGCTG
CATAAATATCATTAATCATCCTTCAGTTCTTGTATTTCATTGTTTCTTTC
TCAAAACCAACAGTAGGAAATCGTTTTGCGTACACCTCGACTTTGTCTCG
GAGGTTTGAAATCTCAGATTGAATGCTTTCATCTGACATCAAAGTTGCTA
CAAAATCCTTCAACTTTGTTCCTTTAGTATCACCCTTGATCTTTAATGCC
AACTTCACAGCTGCATTGAAGAACTCAGCGACCTTTTCAAAATCTTCCTC
AACAAACCCCCTAGATGTGAGGGCTGGGGTTCCCATGCGGATGCCACCAG
GAACCATAGCAGACACGTCACCAGGAACAGTGTTTTTGTTGGCTGCAATA
TGAACTGATTCCAAAACCTTTTCAACTCTTGATCCGTCAATACCCTTGTT
TCTCAAGTTCACCAAGACTAGATGGTTCTCAGTTCCACCAGATACCAGAT
CATAACCTCTCTCTAGCAAACTCTGTGCAAACTTTGAAGAATTGCTGAGA
ACTTGCTCCTGGTAGGCCTTGTATTCAGGGGTCTTTACCTGCTTAAGTGC
GACAGCTAATCCTGATATGGTGTGATTATGTGGACCACCTTGAAGTCCAG
GGAAAACTGCCTGATTAATTTTTGTCTTCATAGGGCATACATCACTTCTT
GTCCTTGTTTATTAATCTCTTTAACCCCCTTCCT
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