CN184817

Overview
NameCN184817
Unique NameCN184817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.304e-41
Identity = 87/192 (45.31%), Postives = 129/192 (67.19%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            +++KIN AVFP LQGGPH + I+G+AVALK+  + E+K Y  QV  N++    +L+ +GY LV+ GT+NHL+L +LR K + G++ EK  +  +I  NKN V GD +A+ PGGIR+G+ ALTSRG  E DFEK+A+F +  V ++L+I+G   G KL DFV  +   +    E+ +LR +VE ++ +F   G
Sbjct:  270 IESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRV-GKKLVDFVVEINKSK----ELLDLRKEVEEFSSKFTLPG 456          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.813e-36
Identity = 82/182 (45.05%), Postives = 114/182 (62.64%), Query Frame = -3
Query:  127 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYA 669
            I++A+FPG QGGP  H I+  A A  +   PE+KAYQ+Q+++N+   A+ LLERG++LVSGGT+NHL+LV+LR  GI G + E +L+ VHI  NKN +P D     V  GIR+GTPA+T+RGF E+D +KVAE    A+ L  K   DT+              E  ++ +  L DK  +YA
Sbjct:  248 IDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII--ALTLQEKDNPDTQ--------------EKARAMVKELCDKYPLYA 413          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.674e-36
Identity = 74/139 (53.24%), Postives = 103/139 (74.10%), Query Frame = -3
Query:  256 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 669
            I++++FPG+QGGP  H I+  AVALK+  T E++ YQ Q+L N+   ++ L+ERG+ LVSGGT+NHL+LV+LRNKGI G   EK L+S++I  NKN +P D  S MV  GIR+GTPA+T+RGF EED  +VA+  + A+
Sbjct:  251 IDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVADIIHDAL 389          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.381e-35
Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = -3
Query:  256 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 669
            I++A+FPGLQGGP  H I+  AV+ K+  +PE+KAYQEQV+ N++K  + L  RG++LVSGGT+NHL+L++LRNK I G   EK+L+ V +  NKNT+P D  S  V  GIR+GTPA+T+RG  E+D   +AE     +
Sbjct:  248 IDKAIFPGLQGGPLMHVIAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIAEIIGTII 386          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.110e-35
Identity = 73/139 (52.52%), Postives = 100/139 (71.94%), Query Frame = -3
Query:  256 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 669
            I++++FPG+QGGP  H I+  AVALK+  T E+K YQ Q+L N+   +  L+ERG+ LVSGGT+NHL+LV+LRNKGI G   EK+L+  +I  NKN VP D  S M+  GIR+GTPA+T+RGF E D  +VA+  + A+
Sbjct:  249 IDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVADIIHDAL 387          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.305e-35
Identity = 78/190 (41.05%), Postives = 113/190 (59.47%), Query Frame = -3
Query:  115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681
            ++ K+N  VFPG QGGP  H I+G AVA K+   PE+KAYQ+QV++N+   AQ L+ERGY +VSGGT+NHL L++L +KG+ G   +  L   HI  NKNTVP D  S  V  G+R+GTPA+T+RGF EE+  ++A                        ++A ++ D   +  I+ +R++V    +R P
Sbjct:  248 VEKKLNSLVFPGTQGGPLMHAIAGKAVAFKEALEPEFKAYQQQVVANARAMAQGLIERGYKVVSGGTDNHLFLIDLVDKGLTGKAADAALGKAHITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGFKEEECRELA-----------------------GWMADVLDDIENEDVIARVREQVTQVCRRLP 414          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAC (Serine hydroxymethyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.305e-35
Identity = 78/186 (41.94%), Postives = 111/186 (59.68%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            IN A+FPGLQGGP  H I+  AVA K+  TPE+KAYQ+QV  N+  FA++L+ERG  ++SG TE+H++LV+LR KGI G   E  L   HI  NKN++P D    MV  GIR+GTPA+T+RGF EE+    A                       + +A ++ + + ++ ++ +R+KV     RFP
Sbjct:  249 INSAIFPGLQGGPLEHVIAAKAVAFKEALTPEFKAYQQQVAKNAKVFAETLIERGLRIISGRTESHVMLVDLRAKGITGKAAEAALGQAHITINKNSIPNDPEKPMVTSGIRVGTPAITTRGFKEEETRITA-----------------------NLLADVLENPNDEANLAAVREKVHALTSRFP 411          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_METTP (Serine hydroxymethyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.543e-34
Identity = 77/186 (41.40%), Postives = 110/186 (59.14%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            I++AVFPG+QGGP  HTI+  AVA K+  TPE++ YQEQ++ N++  A  L+E G+DLVSGGT+NHL+LV L  +GI G   ++ LES  IA NKN +P D  +  V  GIR+GTPA+TSRG  E +  ++A                       D +  ++ D    + I ++R +V    +RFP
Sbjct:  246 IDRAVFPGIQGGPMMHTIAAKAVAFKEAMTPEFRRYQEQIVRNAAALADRLIENGFDLVSGGTDNHLMLVKLLKEGITGKEADETLESAGIALNKNMIPFDPRTPFVTSGIRIGTPAVTSRGMKENEMREIA-----------------------DLITEVIRDMKNPATIESVRSRVRALCERFP 408          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.633e-34
Identity = 79/184 (42.93%), Postives = 112/184 (60.87%), Query Frame = -3
Query:  124 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAK 672
            +I++AVFPG+QGGP  H I+  AVA K+  TPE+K YQ+Q++ N+   A+ L+  GY LVSGGT+NHL+LV+LR+KGI G   EK LE   I  NKN +P D     V  GIR+GTPALT+RG  E++   VA       +L  ++  + K +K+K         E ++ E+  L  +  +Y K
Sbjct:  245 EIDKAVFPGIQGGPLMHVIAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVA-------RLIHEVLSNFKDSKVK---------EKVKKEVEELCKQFPIYRK 412          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_CLOTH (Serine hydroxymethyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.633e-34
Identity = 70/139 (50.36%), Postives = 99/139 (71.22%), Query Frame = -3
Query:  256 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 669
            I++AVFPG+QGGP  H I+  AV+  +V T E+K YQ+Q++ N+   A +L+E+G DLVSGGT+NHL+LV+LRNKG+ G  V+ +L+ V I  NKN +P D  S  V  GIR+GTPA+T+RG  EED  ++A+  N  +
Sbjct:  249 IDKAVFPGIQGGPLMHVIAAKAVSFAEVLTDEFKQYQQQIVKNAKTLANALMEKGIDLVSGGTDNHLMLVDLRNKGLTGKYVQHILDEVCITVNKNGIPFDPESPFVTSGIRIGTPAVTARGMKEEDMVEIADLINLTI 387          
The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC1_DICDI1.304e-4145.31Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYA_DESRM2.813e-3645.05Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_CALS83.674e-3653.24Serine hydroxymethyltransferase OS=Caldicellulosir... [more]
GLYA_ALKOO2.381e-3551.08Serine hydroxymethyltransferase OS=Alkaliphilus or... [more]
GLYA_ANATD3.110e-3552.52Serine hydroxymethyltransferase OS=Anaerocellum th... [more]
GLYA_ALHEH5.305e-3541.05Serine hydroxymethyltransferase OS=Alkalilimnicola... [more]
GLYA_ACIAC5.305e-3541.94Serine hydroxymethyltransferase OS=Acidovorax aven... [more]
GLYA_METTP1.543e-3441.40Serine hydroxymethyltransferase OS=Methanosaeta th... [more]
GLYA_DICT62.633e-3442.93Serine hydroxymethyltransferase OS=Dictyoglomus th... [more]
GLYA_CLOTH2.633e-3450.36Serine hydroxymethyltransferase OS=Clostridium the... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bp
GAGGCTATTTTATATGCTTTCAAGAAACAAATATATGACATACCTTGCTG
CATAAATATCATTAATCATCCTTCAGTTCTTGTATTTCATTGTTTCTTTC
TCAAAACCAACAGTAGGAAATCGTTTTGCGTACACCTCGACTTTGTCTCG
GAGGTTTGAAATCTCAGATTGAATGCTTTCATCTGACATCAAAGTTGCTA
CAAAATCCTTCAACTTTGTTCCTTTAGTATCACCCTTGATCTTTAATGCC
AACTTCACAGCTGCATTGAAGAACTCAGCGACCTTTTCAAAATCTTCCTC
AACAAACCCCCTAGATGTGAGGGCTGGGGTTCCCATGCGGATGCCACCAG
GAACCATAGCAGACACGTCACCAGGAACAGTGTTTTTGTTGGCTGCAATA
TGAACTGATTCCAAAACCTTTTCAACTCTTGATCCGTCAATACCCTTGTT
TCTCAAGTTCACCAAGACTAGATGGTTCTCAGTTCCACCAGATACCAGAT
CATAACCTCTCTCTAGCAAACTCTGTGCAAACTTTGAAGAATTGCTGAGA
ACTTGCTCCTGGTAGGCCTTGTATTCAGGGGTCTTTACCTGCTTAAGTGC
GACAGCTAATCCTGATATGGTGTGATTATGTGGACCACCTTGAAGTCCAG
GGAAAACTGCCTGATTAATTTTTGTCTTCATAGGGCATACATCACTTCTT
GTCCTTGTTTATTAATCTCTTTAACCCCCTTCCT
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