CN184817
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.304e-41 Identity = 87/192 (45.31%), Postives = 129/192 (67.19%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681 +++KIN AVFP LQGGPH + I+G+AVALK+ + E+K Y QV N++ +L+ +GY LV+ GT+NHL+L +LR K + G++ EK + +I NKN V GD +A+ PGGIR+G+ ALTSRG E DFEK+A+F + V ++L+I+G G KL DFV + + E+ +LR +VE ++ +F G Sbjct: 270 IESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRV-GKKLVDFVVEINKSK----ELLDLRKEVEEFSSKFTLPG 456
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.813e-36 Identity = 82/182 (45.05%), Postives = 114/182 (62.64%), Query Frame = -3 Query: 127 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYA 669 I++A+FPG QGGP H I+ A A + PE+KAYQ+Q+++N+ A+ LLERG++LVSGGT+NHL+LV+LR GI G + E +L+ VHI NKN +P D V GIR+GTPA+T+RGF E+D +KVAE A+ L K DT+ E ++ + L DK +YA Sbjct: 248 IDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII--ALTLQEKDNPDTQ--------------EKARAMVKELCDKYPLYA 413
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.674e-36 Identity = 74/139 (53.24%), Postives = 103/139 (74.10%), Query Frame = -3 Query: 256 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 669 I++++FPG+QGGP H I+ AVALK+ T E++ YQ Q+L N+ ++ L+ERG+ LVSGGT+NHL+LV+LRNKGI G EK L+S++I NKN +P D S MV GIR+GTPA+T+RGF EED +VA+ + A+ Sbjct: 251 IDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVADIIHDAL 389
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.381e-35 Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = -3 Query: 256 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 669 I++A+FPGLQGGP H I+ AV+ K+ +PE+KAYQEQV+ N++K + L RG++LVSGGT+NHL+L++LRNK I G EK+L+ V + NKNT+P D S V GIR+GTPA+T+RG E+D +AE + Sbjct: 248 IDKAIFPGLQGGPLMHVIAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIAEIIGTII 386
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.110e-35 Identity = 73/139 (52.52%), Postives = 100/139 (71.94%), Query Frame = -3 Query: 256 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 669 I++++FPG+QGGP H I+ AVALK+ T E+K YQ Q+L N+ + L+ERG+ LVSGGT+NHL+LV+LRNKGI G EK+L+ +I NKN VP D S M+ GIR+GTPA+T+RGF E D +VA+ + A+ Sbjct: 249 IDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVADIIHDAL 387
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.305e-35 Identity = 78/190 (41.05%), Postives = 113/190 (59.47%), Query Frame = -3 Query: 115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681 ++ K+N VFPG QGGP H I+G AVA K+ PE+KAYQ+QV++N+ AQ L+ERGY +VSGGT+NHL L++L +KG+ G + L HI NKNTVP D S V G+R+GTPA+T+RGF EE+ ++A ++A ++ D + I+ +R++V +R P Sbjct: 248 VEKKLNSLVFPGTQGGPLMHAIAGKAVAFKEALEPEFKAYQQQVVANARAMAQGLIERGYKVVSGGTDNHLFLIDLVDKGLTGKAADAALGKAHITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGFKEEECRELA-----------------------GWMADVLDDIENEDVIARVREQVTQVCRRLP 414
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAC (Serine hydroxymethyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glyA PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.305e-35 Identity = 78/186 (41.94%), Postives = 111/186 (59.68%), Query Frame = -3 Query: 115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669 IN A+FPGLQGGP H I+ AVA K+ TPE+KAYQ+QV N+ FA++L+ERG ++SG TE+H++LV+LR KGI G E L HI NKN++P D MV GIR+GTPA+T+RGF EE+ A + +A ++ + + ++ ++ +R+KV RFP Sbjct: 249 INSAIFPGLQGGPLEHVIAAKAVAFKEALTPEFKAYQQQVAKNAKVFAETLIERGLRIISGRTESHVMLVDLRAKGITGKAAEAALGQAHITINKNSIPNDPEKPMVTSGIRVGTPAITTRGFKEEETRITA-----------------------NLLADVLENPNDEANLAAVREKVHALTSRFP 411
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_METTP (Serine hydroxymethyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=glyA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.543e-34 Identity = 77/186 (41.40%), Postives = 110/186 (59.14%), Query Frame = -3 Query: 115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669 I++AVFPG+QGGP HTI+ AVA K+ TPE++ YQEQ++ N++ A L+E G+DLVSGGT+NHL+LV L +GI G ++ LES IA NKN +P D + V GIR+GTPA+TSRG E + ++A D + ++ D + I ++R +V +RFP Sbjct: 246 IDRAVFPGIQGGPMMHTIAAKAVAFKEAMTPEFRRYQEQIVRNAAALADRLIENGFDLVSGGTDNHLMLVKLLKEGITGKEADETLESAGIALNKNMIPFDPRTPFVTSGIRIGTPAVTSRGMKENEMREIA-----------------------DLITEVIRDMKNPATIESVRSRVRALCERFP 408
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.633e-34 Identity = 79/184 (42.93%), Postives = 112/184 (60.87%), Query Frame = -3 Query: 124 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAK 672 +I++AVFPG+QGGP H I+ AVA K+ TPE+K YQ+Q++ N+ A+ L+ GY LVSGGT+NHL+LV+LR+KGI G EK LE I NKN +P D V GIR+GTPALT+RG E++ VA +L ++ + K +K+K E ++ E+ L + +Y K Sbjct: 245 EIDKAVFPGIQGGPLMHVIAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVA-------RLIHEVLSNFKDSKVK---------EKVKKEVEELCKQFPIYRK 412
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_CLOTH (Serine hydroxymethyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glyA PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.633e-34 Identity = 70/139 (50.36%), Postives = 99/139 (71.22%), Query Frame = -3 Query: 256 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 669 I++AVFPG+QGGP H I+ AV+ +V T E+K YQ+Q++ N+ A +L+E+G DLVSGGT+NHL+LV+LRNKG+ G V+ +L+ V I NKN +P D S V GIR+GTPA+T+RG EED ++A+ N + Sbjct: 249 IDKAVFPGIQGGPLMHVIAAKAVSFAEVLTDEFKQYQQQIVKNAKTLANALMEKGIDLVSGGTDNHLMLVDLRNKGLTGKYVQHILDEVCITVNKNGIPFDPESPFVTSGIRIGTPAVTARGMKEEDMVEIADLINLTI 387 The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bpback to top |