CN184817
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 3.439e-34 Identity = 74/189 (39.15%), Postives = 116/189 (61.38%), Query Frame = -3 Query: 115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681 + +IN AVFP LQGGPHNHTI+G+A AL TPE+ Y +V+ NS + L G D+++GGT+NH++LV+LR+ G+DG+ VE + +++ I+ N+N + G+ S + P GIR+GT A+T+RGF E+ +V + VKL ++ G K +K T + ++ LR +V A+ +P Sbjct: 269 LDARINFAVFPMLQGGPHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLCREMTGGRKMSKADLHRVTSDARVMGSEQVLVLRRRVCALAEAYP 457
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.439e-34 Identity = 72/140 (51.43%), Postives = 99/140 (70.71%), Query Frame = -3 Query: 256 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 672 +I++AVFPG+QGGP H I+ AVA KQ+ P+Y+AY QV+ N+ AQ+LLERGY LV+GGT+NHL+LV+LR KGI G E +L+ V I NKN +P D MV GIR+GTPA+T+RG E + ++A+ + A+ Sbjct: 245 EIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAI 384
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.439e-34 Identity = 70/142 (49.30%), Postives = 101/142 (71.13%), Query Frame = -3 Query: 253 TKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVK 675 TKIN+AVFPG+QGGP H I+ AVA K+ P +K YQ +++SN+ A +LLERG++LVSGGT+NHL+LV+LR+K I G +++ ++V + NKN VP D + GIR+GTPA+TSRG E+D ++AE + A++ Sbjct: 249 TKINRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAIE 390
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.491e-34 Identity = 78/189 (41.27%), Postives = 111/189 (58.73%), Query Frame = -3 Query: 106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 669 IN A+FPG+QGGP H I+G AVA K+ +PE+KAYQEQV+ N++ A++L+ RG +VSG TE+H++LV+LR K I G EKVL HI NKN +P D V G+R+G+PA+T+RGF E + KVA +A ++ + ++ I+ +R KV K+FP G Sbjct: 250 INSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAH-----------------------LIADVLDNPHDEANIAAVRAKVAELTKQFPVYG 415
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.491e-34 Identity = 67/142 (47.18%), Postives = 101/142 (71.13%), Query Frame = -3 Query: 256 KTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 678 K +I++A+FPGLQGGP H I+ AV+ ++ + E+K YQ+QV+ N+S A L GYDLV+GG++NHL+LV+L+ KG+ G + E+VL+ VHI NKN VP D V G+R+GTPA+T+RGF E++ ++VA+ + + Sbjct: 243 KKEIDKAMFPGLQGGPLMHVIASKAVSFQEALSSEFKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVI 384
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA1_RALEJ (Serine hydroxymethyltransferase 1 OS=Ralstonia eutropha (strain JMP134) GN=glyA1 PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.865e-34 Identity = 75/189 (39.68%), Postives = 111/189 (58.73%), Query Frame = -3 Query: 106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 669 IN ++FPG+QGGP H I+G AVA K+ TPE+KAYQEQV+ N++ A++L+ RG +VSG TE+H++LV+LR K I G E++L H+ NKN +P D V GIR+G+PA+T+RGF EE+ V + +A ++ + I+++R++V KRFP G Sbjct: 250 INSSIFPGIQGGPLMHVIAGKAVAFKEALTPEFKAYQEQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEEARIVG-----------------------NLIADVLDNPHDAGNIASVREQVSALTKRFPVYG 415
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.000e-33 Identity = 74/164 (45.12%), Postives = 105/164 (64.02%), Query Frame = -3 Query: 190 KTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATL 678 K N+A+FPG+QGGP H I+ AV K+ PE+K YQ+Q++ N+ + L RG +VS GT+NHL+LV+L G+ G +EK+L++ HI ANKNT+P D V GIR+GTPA TSRG E+DF+KVAE A+ + +K +G++ K + TL Sbjct: 247 KYNFNKAIFPGIQGGPLMHVIAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVAE----AIAMIIK-EGESAVEPAKAIIKTL 405
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DICNV (Serine hydroxymethyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=glyA PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.307e-33 Identity = 77/193 (39.90%), Postives = 108/193 (55.96%), Query Frame = -3 Query: 106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681 ++ K+N A+FPG QGGP H I+ AVA K+ P ++ YQEQV+ N+ A+ + RGYD+VSGGT+NHL+LV+L NKG+ G L HI NKN+VP D S V GIR+GTPA+T+RGF + +KVA +++ ++ D + I N+R+KV FP G Sbjct: 247 IEKKLNSAIFPGSQGGPLMHVIAAKAVAFKEALEPSFQKYQEQVVENAKTMAKVFIARGYDIVSGGTQNHLMLVSLINKGLTGKAANDALSRAHITVNKNSVPNDPQSPFVTSGIRIGTPAITTRGFGVNEVKKVA-----------------------NWICDVLDDIDNEEVILNVRNKVAELCAEFPVYG 416
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.707e-33 Identity = 74/190 (38.95%), Postives = 109/190 (57.37%), Query Frame = -3 Query: 106 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 672 K+ VFPG+QGGP H I+G AVA K+ P +KAYQ+QV+ N+ A +L+ERGY +VSGGT+NHL+LV++ K + G E L HI NKN+VP D S V G+R+GTPA+T+RG+VE+D L +++A ++ + + I+ +RD V +++P G Sbjct: 251 KLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIERGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDC-----------------------VDLANWIADVLDAPNDDAVIARVRDAVSAQCRKYPVYG 417
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DIAST (Serine hydroxymethyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=glyA PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.229e-33 Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = -3 Query: 115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669 IN A+FPGLQGGP H I+ AVA K+ +PE+K YQ+QV N+ FA++L++RG +VSG TE+H++LV+LR KGI G E L HI NKN +P D MV GIR+GTPA+T+RGF EE+ A + VA ++ + ++ + +R KV RFP Sbjct: 249 INSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEETRLTA-----------------------NLVADVLDNPHDEANLEAVRAKVHALTSRFP 411 The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bpback to top |