CN184817

Overview
NameCN184817
Unique NameCN184817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.439e-34
Identity = 74/189 (39.15%), Postives = 116/189 (61.38%), Query Frame = -3
Query:  115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681
            +  +IN AVFP LQGGPHNHTI+G+A AL    TPE+  Y  +V+ NS +    L   G D+++GGT+NH++LV+LR+ G+DG+ VE + +++ I+ N+N + G+ S + P GIR+GT A+T+RGF  E+  +V +     VKL  ++ G  K +K      T  +      ++  LR +V   A+ +P
Sbjct:  269 LDARINFAVFPMLQGGPHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLCREMTGGRKMSKADLHRVTSDARVMGSEQVLVLRRRVCALAEAYP 457          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.439e-34
Identity = 72/140 (51.43%), Postives = 99/140 (70.71%), Query Frame = -3
Query:  256 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 672
            +I++AVFPG+QGGP  H I+  AVA KQ+  P+Y+AY  QV+ N+   AQ+LLERGY LV+GGT+NHL+LV+LR KGI G   E +L+ V I  NKN +P D    MV  GIR+GTPA+T+RG  E +  ++A+  + A+
Sbjct:  245 EIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAI 384          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.439e-34
Identity = 70/142 (49.30%), Postives = 101/142 (71.13%), Query Frame = -3
Query:  253 TKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVK 675
            TKIN+AVFPG+QGGP  H I+  AVA K+   P +K YQ +++SN+   A +LLERG++LVSGGT+NHL+LV+LR+K I G   +++ ++V +  NKN VP D     +  GIR+GTPA+TSRG  E+D  ++AE  + A++
Sbjct:  249 TKINRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAIE 390          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.491e-34
Identity = 78/189 (41.27%), Postives = 111/189 (58.73%), Query Frame = -3
Query:  106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 669
            IN A+FPG+QGGP  H I+G AVA K+  +PE+KAYQEQV+ N++  A++L+ RG  +VSG TE+H++LV+LR K I G   EKVL   HI  NKN +P D     V  G+R+G+PA+T+RGF E +  KVA                         +A ++ +   ++ I+ +R KV    K+FP  G
Sbjct:  250 INSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAH-----------------------LIADVLDNPHDEANIAAVRAKVAELTKQFPVYG 415          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.491e-34
Identity = 67/142 (47.18%), Postives = 101/142 (71.13%), Query Frame = -3
Query:  256 KTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 678
            K +I++A+FPGLQGGP  H I+  AV+ ++  + E+K YQ+QV+ N+S  A  L   GYDLV+GG++NHL+LV+L+ KG+ G + E+VL+ VHI  NKN VP D     V  G+R+GTPA+T+RGF E++ ++VA+  +  +
Sbjct:  243 KKEIDKAMFPGLQGGPLMHVIASKAVSFQEALSSEFKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVI 384          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA1_RALEJ (Serine hydroxymethyltransferase 1 OS=Ralstonia eutropha (strain JMP134) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.865e-34
Identity = 75/189 (39.68%), Postives = 111/189 (58.73%), Query Frame = -3
Query:  106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 669
            IN ++FPG+QGGP  H I+G AVA K+  TPE+KAYQEQV+ N++  A++L+ RG  +VSG TE+H++LV+LR K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+RGF EE+   V                        + +A ++ +      I+++R++V    KRFP  G
Sbjct:  250 INSSIFPGIQGGPLMHVIAGKAVAFKEALTPEFKAYQEQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEEARIVG-----------------------NLIADVLDNPHDAGNIASVREQVSALTKRFPVYG 415          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.000e-33
Identity = 74/164 (45.12%), Postives = 105/164 (64.02%), Query Frame = -3
Query:  190 KTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATL 678
            K   N+A+FPG+QGGP  H I+  AV  K+   PE+K YQ+Q++ N+    + L  RG  +VS GT+NHL+LV+L   G+ G  +EK+L++ HI ANKNT+P D     V  GIR+GTPA TSRG  E+DF+KVAE    A+ + +K +G++     K  + TL
Sbjct:  247 KYNFNKAIFPGIQGGPLMHVIAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVAE----AIAMIIK-EGESAVEPAKAIIKTL 405          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DICNV (Serine hydroxymethyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.307e-33
Identity = 77/193 (39.90%), Postives = 108/193 (55.96%), Query Frame = -3
Query:  106 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 681
            ++ K+N A+FPG QGGP  H I+  AVA K+   P ++ YQEQV+ N+   A+  + RGYD+VSGGT+NHL+LV+L NKG+ G      L   HI  NKN+VP D  S  V  GIR+GTPA+T+RGF   + +KVA                       +++  ++ D   +  I N+R+KV      FP  G
Sbjct:  247 IEKKLNSAIFPGSQGGPLMHVIAAKAVAFKEALEPSFQKYQEQVVENAKTMAKVFIARGYDIVSGGTQNHLMLVSLINKGLTGKAANDALSRAHITVNKNSVPNDPQSPFVTSGIRIGTPAITTRGFGVNEVKKVA-----------------------NWICDVLDDIDNEEVILNVRNKVAELCAEFPVYG 416          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.707e-33
Identity = 74/190 (38.95%), Postives = 109/190 (57.37%), Query Frame = -3
Query:  106 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 672
            K+   VFPG+QGGP  H I+G AVA K+   P +KAYQ+QV+ N+   A +L+ERGY +VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+VE+D                          L +++A ++   +  + I+ +RD V    +++P  G
Sbjct:  251 KLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIERGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDC-----------------------VDLANWIADVLDAPNDDAVIARVRDAVSAQCRKYPVYG 417          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DIAST (Serine hydroxymethyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.229e-33
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            IN A+FPGLQGGP  H I+  AVA K+  +PE+K YQ+QV  N+  FA++L++RG  +VSG TE+H++LV+LR KGI G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+RGF EE+    A                       + VA ++ +   ++ +  +R KV     RFP
Sbjct:  249 INSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEETRLTA-----------------------NLVADVLDNPHDEANLEAVRAKVHALTSRFP 411          
The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_ENCCU3.439e-3439.15Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_SYMTH3.439e-3451.43Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_PELTS3.439e-3449.30Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_RALPJ4.491e-3441.27Serine hydroxymethyltransferase OS=Ralstonia picke... [more]
GLYA_NATTJ4.491e-3447.18Serine hydroxymethyltransferase OS=Natranaerobius ... [more]
GLYA1_RALEJ5.865e-3439.68Serine hydroxymethyltransferase 1 OS=Ralstonia eut... [more]
GLYA_EUBR31.000e-3345.12Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_DICNV1.307e-3339.90Serine hydroxymethyltransferase OS=Dichelobacter n... [more]
GLYA_STRMK1.707e-3338.95Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_DIAST2.229e-3341.40Serine hydroxymethyltransferase OS=Diaphorobacter ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bp
GAGGCTATTTTATATGCTTTCAAGAAACAAATATATGACATACCTTGCTG
CATAAATATCATTAATCATCCTTCAGTTCTTGTATTTCATTGTTTCTTTC
TCAAAACCAACAGTAGGAAATCGTTTTGCGTACACCTCGACTTTGTCTCG
GAGGTTTGAAATCTCAGATTGAATGCTTTCATCTGACATCAAAGTTGCTA
CAAAATCCTTCAACTTTGTTCCTTTAGTATCACCCTTGATCTTTAATGCC
AACTTCACAGCTGCATTGAAGAACTCAGCGACCTTTTCAAAATCTTCCTC
AACAAACCCCCTAGATGTGAGGGCTGGGGTTCCCATGCGGATGCCACCAG
GAACCATAGCAGACACGTCACCAGGAACAGTGTTTTTGTTGGCTGCAATA
TGAACTGATTCCAAAACCTTTTCAACTCTTGATCCGTCAATACCCTTGTT
TCTCAAGTTCACCAAGACTAGATGGTTCTCAGTTCCACCAGATACCAGAT
CATAACCTCTCTCTAGCAAACTCTGTGCAAACTTTGAAGAATTGCTGAGA
ACTTGCTCCTGGTAGGCCTTGTATTCAGGGGTCTTTACCTGCTTAAGTGC
GACAGCTAATCCTGATATGGTGTGATTATGTGGACCACCTTGAAGTCCAG
GGAAAACTGCCTGATTAATTTTTGTCTTCATAGGGCATACATCACTTCTT
GTCCTTGTTTATTAATCTCTTTAACCCCCTTCCT
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