CN184817

Overview
NameCN184817
Unique NameCN184817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_CUPTR (Serine hydroxymethyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.229e-33
Identity = 74/189 (39.15%), Postives = 111/189 (58.73%), Query Frame = -3
Query:  106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 669
            IN ++FPG+QGGP  H I+G AVA K+  TPE+KAYQ+QV+ N++  A++L+ RG  +VSG TE+H++LV+LR K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+RGF EE+   V                        + +A ++ +    + I+ +R++V    KRFP  G
Sbjct:  250 INSSIFPGIQGGPLMHVIAGKAVAFKEALTPEFKAYQQQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEEARIVG-----------------------NLIADVLDNPHDAANIAAVREQVSALTKRFPVYG 415          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ACISJ (Serine hydroxymethyltransferase OS=Acidovorax sp. (strain JS42) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.229e-33
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            IN A+FPGLQGGP  H I+  AVA K+  +PE+K YQ+QV  N+  FA++L++RG  +VSG TE+H++LV+LR KGI G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+RGF EE+    A                       + VA ++ +   ++ +  +R KV     RFP
Sbjct:  249 INSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEETRLTA-----------------------NLVADVLDNPHDEANLEAVRAKVHALTSRFP 411          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_RALEH (Serine hydroxymethyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.911e-33
Identity = 74/189 (39.15%), Postives = 110/189 (58.20%), Query Frame = -3
Query:  106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 669
            IN A+FPG+QGGP  H I+G AVA K+  TPE+K YQ+QV+ N++  A++L+ RG  +VSG TE+H++LV+LR K I G   E++L   HI  NKN +P D     V  GIR+G+PA+T+RGF EE+   V                        + +A ++ +    + I+++R++     KRFP  G
Sbjct:  250 INSAIFPGIQGGPLMHVIAGKAVAFKEALTPEFKEYQQQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEEEARIVG-----------------------NLIADVLDNPHDAANIASVREQAAALTKRFPVYG 415          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_STRM5 (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.802e-33
Identity = 74/190 (38.95%), Postives = 108/190 (56.84%), Query Frame = -3
Query:  106 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 672
            K+   VFPG+QGGP  H I+G AVA K+   P +KAYQ+QV+ N+   A +L+ RGY +VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+VE+D                          L +++A ++   S  + I+ +RD V    +++P  G
Sbjct:  251 KLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIARGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDC-----------------------VDLANWIADVLDAPSDDAVIARVRDAVSAQCRKYPVYG 417          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_RHOFD (Serine hydroxymethyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.802e-33
Identity = 77/189 (40.74%), Postives = 108/189 (57.14%), Query Frame = -3
Query:  106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 669
            IN A+FPGLQGGP  H I+  AVA K+   PE+K YQ+QVL+N+   A++L+ RG  +VSG TE+H++LV+LR+K I G   E VL S H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+    A                       + +A ++ +    + I  +R KV    KRFP  G
Sbjct:  249 INSAIFPGLQGGPLMHVIAAKAVAFKEALQPEFKVYQQQVLTNARVVAETLVSRGLRIVSGRTESHVMLVDLRSKSITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEEARITA-----------------------NLIADVLDNPRDSANIDAVRAKVNALTKRFPVYG 414          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.802e-33
Identity = 77/186 (41.40%), Postives = 109/186 (58.60%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            IN A+FPG+QGGP  H I+G AVA K+ ++P +KAYQEQV+ N+   A++L+ RG  +VSG TE+H++LV+LR K I G   EKVL   HI  NKN +P D     V  GIR+G+PA+T+RGF E +  KVA                         +A ++ +   ++ I+ +R KV    K+FP
Sbjct:  250 INSAIFPGIQGGPLMHVIAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAH-----------------------LIADVLDNPHDEANIAAVRAKVAELTKQFP 412          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_POLNA (Serine hydroxymethyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 77/189 (40.74%), Postives = 106/189 (56.08%), Query Frame = -3
Query:  106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 669
            IN A+FPGLQGGP  H I+  A+A K+  +PE+K YQ+QVL N+   A++L +RG  +VSG TE+H++LV+LR KGI G   E VL S H+  NKN +P D    MV  G+R+GTPA+T+RGF                       GD +     + VA ++ +    + I  +R KV     RFP  G
Sbjct:  249 INSAIFPGLQGGPLMHVIAAKAIAFKEALSPEFKIYQQQVLKNAQIVAETLTQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGF-----------------------GDEEARMTANLVADVLDNPRDAANIEAVRAKVHALTSRFPVYG 414          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 75/184 (40.76%), Postives = 112/184 (60.87%), Query Frame = -3
Query:  124 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAK 672
            +I++AVFPG+QGGP  H I+  AVA K+  +PE+K YQ+Q++ N+   A+ L++ GY LVSGGT+NHL+LV+LR+KGI G   EK LE   I  NKN +P D     +  GIR+GTPALT+RG  E++   +A       +L  ++  + K  ++K         E ++ E+  L  +  +Y K
Sbjct:  245 EIDKAVFPGIQGGPLMHVIAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIA-------RLIHEVLSNFKDERVK---------EKVKKEVEELCKQFPIYRK 412          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 70/142 (49.30%), Postives = 100/142 (70.42%), Query Frame = -3
Query:  274 VCPMK--TKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFEKVAE 690
            +CP +    I++AVFPG+QGGP  H I+  AVAL + + PE+K YQEQ++ N+   AQ+L ERG++LV+GGT+ HL+LV+LRNKG+ G+  E +L+ V +  NKN VP D     V  GIR+GTPA+T+RG  E+   ++AE
Sbjct:  240 LCPEEYAAAIDKAVFPGIQGGPLMHVIAAKAVALGEAQRPEFKTYQEQIVKNARALAQALQERGFELVAGGTDTHLILVDLRNKGLTGAVAEDLLDRVDVTVNKNMVPFDPQPPRVTSGIRIGTPAVTTRGMKEDSMVQIAE 381          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_RICCK (Serine hydroxymethyltransferase OS=Rickettsia canadensis (strain McKiel) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 70/133 (52.63%), Postives = 92/133 (69.17%), Query Frame = -3
Query:  277 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVA 672
            KIN A+FPGLQGGP  H I+  AVA ++   P+YK+Y +QV+SN+   A+ L ERGYD+++GGT+NH+VLV+LR  GI G      L+   I  NKNT+P D  S  +  GIR+GTPA T+RGF E+DF  VA
Sbjct:  250 KINSALFPGLQGGPLMHVIAAKAVAFQEALQPKYKSYIQQVISNAEALARILQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNTIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVA 382          
The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CUPTR2.229e-3339.15Serine hydroxymethyltransferase OS=Cupriavidus tai... [more]
GLYA_ACISJ2.229e-3341.40Serine hydroxymethyltransferase OS=Acidovorax sp. ... [more]
GLYA_RALEH2.911e-3339.15Serine hydroxymethyltransferase OS=Ralstonia eutro... [more]
GLYA_STRM53.802e-3338.95Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_RHOFD3.802e-3340.74Serine hydroxymethyltransferase OS=Rhodoferax ferr... [more]
GLYA1_RALSO3.802e-3341.40Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA_POLNA4.965e-3340.74Serine hydroxymethyltransferase OS=Polaromonas nap... [more]
GLYA_DICTD4.965e-3340.76Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_DESAP4.965e-3349.30Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_RICCK8.469e-3352.63Serine hydroxymethyltransferase OS=Rickettsia cana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bp
GAGGCTATTTTATATGCTTTCAAGAAACAAATATATGACATACCTTGCTG
CATAAATATCATTAATCATCCTTCAGTTCTTGTATTTCATTGTTTCTTTC
TCAAAACCAACAGTAGGAAATCGTTTTGCGTACACCTCGACTTTGTCTCG
GAGGTTTGAAATCTCAGATTGAATGCTTTCATCTGACATCAAAGTTGCTA
CAAAATCCTTCAACTTTGTTCCTTTAGTATCACCCTTGATCTTTAATGCC
AACTTCACAGCTGCATTGAAGAACTCAGCGACCTTTTCAAAATCTTCCTC
AACAAACCCCCTAGATGTGAGGGCTGGGGTTCCCATGCGGATGCCACCAG
GAACCATAGCAGACACGTCACCAGGAACAGTGTTTTTGTTGGCTGCAATA
TGAACTGATTCCAAAACCTTTTCAACTCTTGATCCGTCAATACCCTTGTT
TCTCAAGTTCACCAAGACTAGATGGTTCTCAGTTCCACCAGATACCAGAT
CATAACCTCTCTCTAGCAAACTCTGTGCAAACTTTGAAGAATTGCTGAGA
ACTTGCTCCTGGTAGGCCTTGTATTCAGGGGTCTTTACCTGCTTAAGTGC
GACAGCTAATCCTGATATGGTGTGATTATGTGGACCACCTTGAAGTCCAG
GGAAAACTGCCTGATTAATTTTTGTCTTCATAGGGCATACATCACTTCTT
GTCCTTGTTTATTAATCTCTTTAACCCCCTTCCT
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