CN184817

Overview
NameCN184817
Unique NameCN184817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_POLSJ (Serine hydroxymethyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 77/186 (41.40%), Postives = 107/186 (57.53%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            IN A+FPGLQGGP  H I+  AVA K+  +PE+K YQ+QVL+N+   A++L +RG  +VSG TE+HL+LV+LR KGI G   E VL S H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+    A                       + +A ++ +    + I  +R KV     RFP
Sbjct:  249 INSAIFPGLQGGPLMHVIAAKAVAFKEALSPEFKTYQQQVLTNARIVAETLTQRGLRIVSGRTESHLMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEEARVTA-----------------------NLIADVLDNPRDAANIEAVRAKVNALTSRFP 411          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DESHY (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glyA PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 71/164 (43.29%), Postives = 108/164 (65.85%), Query Frame = -3
Query:  181 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSD 669
            I++A+FPG+QGGP  H I+  AVA  +   PE+  YQ++++ N+   +++L E+G+ +VSGGT+NHL+LV++R+KG+ G   E +L+ V I  NKNT+P D  S MV  GIR+GTPA+TSRG      +K+A    AA+ +AL    +    K +D VA L ++
Sbjct:  250 IDKAIFPGIQGGPLMHVIAAKAVAFGEALKPEFVEYQKRIVENAKVLSETLAEKGFRIVSGGTDNHLMLVDVRSKGLTGKEAEYILDEVGITVNKNTIPYDPASPMVTSGIRIGTPAVTSRGMDTLAMKKIA----AAIDIALSEPNEAGAAKARDMVAALCAE 409          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_DESHD (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 71/164 (43.29%), Postives = 108/164 (65.85%), Query Frame = -3
Query:  181 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSD 669
            I++A+FPG+QGGP  H I+  AVA  +   PE+  YQ++++ N+   +++L E+G+ +VSGGT+NHL+LV++R+KG+ G   E +L+ V I  NKNT+P D  S MV  GIR+GTPA+TSRG      +K+A    AA+ +AL    +    K +D VA L ++
Sbjct:  250 IDKAIFPGIQGGPLMHVIAAKAVAFGEALKPEFVEYQKRIVENAKVLSETLAEKGFRIVSGGTDNHLMLVDVRSKGLTGKEAEYILDEVGITVNKNTIPYDPASPMVTSGIRIGTPAVTSRGMDTLAMKKIA----AAIDIALSEPNEAGAAKARDMVAALCAE 409          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 75/192 (39.06%), Postives = 112/192 (58.33%), Query Frame = -3
Query:   97 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVGFEK 669
            +++AVFPGLQGGPHNHT + +AVAL +   PE++ Y   +++N++  A+ LL RG+DLVSGGT+NHL+LV+L +KG+ G  V + L+   I  N NTVP D      P GIR+GTPA+TSRG    +  ++A + +         KGD               +E++ +    +  +V    K FPT G ++
Sbjct:  253 LDKAVFPGLQGGPHNHTTAAIAVALLEAMQPEFRDYARNIVANAAVLAEELLARGFDLVSGGTDNHLILVDLTSKGVAGKPVARALDRAGIELNYNTVPFDPRKPFDPSGIRLGTPAVTSRGMGPAEMRQIAAWIDEVTTAV--AKGD---------------EEALAAVEQRVAGEVRELTKNFPTPGLDR 427          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPL (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Lens) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.106e-32
Identity = 76/190 (40.00%), Postives = 109/190 (57.37%), Query Frame = -3
Query:  115 MKTKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 681
            ++ K+N AVFPG+QGGP  H I+  AVA  +   PE+K YQ+QVL+N+      L  RGYD+VSGGT+NHL+LV+L NKGI G   +  L   +I  NKN+VP D  S  V  G+R+GTPA T+RGF E +                        T L ++VA ++ +   ++ IS ++ +V +  + FP
Sbjct:  248 IEKKLNSAVFPGMQGGPLMHVIAAKAVAFAEALLPEFKTYQQQVLANARTMCSVLQSRGYDIVSGGTDNHLLLVDLINKGITGKEADAALGRANITVNKNSVPNDPRSPFVTSGLRLGTPAATTRGFKEREI-----------------------TLLSNWVADVLDNVHDETNISRVKTQVLLLCREFP 414          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_ALKMQ (Serine hydroxymethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.106e-32
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = -3
Query:  256 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAV 669
            I++A+FPGLQGGP  H I+  AVA K+   P +KAYQEQV+ N+    + L ++G+DLVS GT+ HL+L++LRNK I G   E++ + V I  NKNT+P D  S  V  GIR+GTPA+T+RG  EE+ +K+A   N  +
Sbjct:  248 IDKAIFPGLQGGPLMHVIAAKAVAFKEALEPGFKAYQEQVIKNAKALGEELKKQGFDLVSDGTDTHLLLIDLRNKNITGKDAERLFDEVGITVNKNTIPFDPQSPFVTSGIRIGTPAVTTRGMKEEEMKKIAGVMNIII 386          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_VEREI (Serine hydroxymethyltransferase OS=Verminephrobacter eiseniae (strain EF01-2) GN=glyA PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.445e-32
Identity = 77/189 (40.74%), Postives = 105/189 (55.56%), Query Frame = -3
Query:  106 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFPTVG 669
            I+ A+FPGLQGGP  H I+  AVA ++   P ++ YQEQVL N+   AQ+L  RG  +VSGGT++H++LV+LR KGI G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF EE     AE                        +A L+      + I+ +R KV+    RFP  G
Sbjct:  249 IHSAIFPGLQGGPLMHVIAAKAVAFQEALQPGFRLYQEQVLKNAKVLAQTLAARGLRIVSGGTQSHMMLVDLRAKGITGKEAEAVLGAAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKEEQARSTAE-----------------------LIADLLDKPRDAANIAAVRAKVDALTARFPVYG 414          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_VARPS (Serine hydroxymethyltransferase OS=Variovorax paradoxus (strain S110) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.445e-32
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = -3
Query:  115 INQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 669
            IN A+FPGLQGGP  H I+  AVA K+  +PE+KAYQ+QV+ N+   A +L ERG  +VSG TE+H++LV+LR KGI G   E VL S H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+    A                       + +A ++ +    + I  +R KV     RFP
Sbjct:  249 INSAIFPGLQGGPLMHVIAAKAVAFKEAMSPEFKAYQQQVVKNAQIVADTLTERGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFRDEEARITA-----------------------NLIADVLENPRDAANIDAVRAKVHALTSRFP 411          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_RICAH (Serine hydroxymethyltransferase OS=Rickettsia akari (strain Hartford) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.887e-32
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = -3
Query:  280 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKV 672
            KIN A+FPGLQGGP  H ++  AVA  +   PEYK+Y +Q++SN+   A SL ERGYD+++GGT+NH+VLV+LR  GI G      L++  I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V
Sbjct:  250 KINSALFPGLQGGPLMHIVAAKAVAFLESLQPEYKSYIKQIISNAKALASSLQERGYDILTGGTDNHIVLVDLRKNGITGKLAANSLDNAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEQDFVSV 381          
BLAST of CN184817 vs. ExPASy Swiss-Prot
Match: GLYA_GLUOX (Serine hydroxymethyltransferase OS=Gluconobacter oxydans GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.887e-32
Identity = 72/187 (38.50%), Postives = 111/187 (59.36%), Query Frame = -3
Query:  115 KINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFNAAVKLALKIKGDTKGTKLKDFVATLMSDESIQSEISNLRDKVEVYAKRFP 672
            K+N AVFPGLQGGP  H I+G AVA  +  + E+KAYQ++VL+N+   A  L  RG+D+V+GGT++HL+LV+LR K + G   E +LE   I ANKN +P D     V  GIR+G+PA T+RGF E +F +V                   G  + + +   + +++ ++  + + ++V+   +RFP
Sbjct:  260 KVNSAVFPGLQGGPLMHVIAGKAVAFGEALSDEFKAYQKRVLANARALADELQNRGFDIVTGGTDSHLILVDLRPKKVTGKLAEAILERAGITANKNAIPFDPEKPFVTSGIRLGSPAATARGFGEAEFREV-------------------GRMIDEVLTAALEEDNAEAVTARVHEEVKALCRRFP 427          
The following BLAST results are available for this feature:
BLAST of CN184817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_POLSJ8.469e-3341.40Serine hydroxymethyltransferase OS=Polaromonas sp.... [more]
GLYA_DESHY8.469e-3343.29Serine hydroxymethyltransferase OS=Desulfitobacter... [more]
GLYA_DESHD8.469e-3343.29Serine hydroxymethyltransferase OS=Desulfitobacter... [more]
GLYA_ACIC18.469e-3339.06Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA_LEGPL1.106e-3240.00Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_ALKMQ1.106e-3248.92Serine hydroxymethyltransferase OS=Alkaliphilus me... [more]
GLYA_VEREI1.445e-3240.74Serine hydroxymethyltransferase OS=Verminephrobact... [more]
GLYA_VARPS1.445e-3241.40Serine hydroxymethyltransferase OS=Variovorax para... [more]
GLYA_RICAH1.887e-3251.52Serine hydroxymethyltransferase OS=Rickettsia akar... [more]
GLYA_GLUOX1.887e-3238.50Serine hydroxymethyltransferase OS=Gluconobacter o... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184817 ID=CN184817; Name=CN184817; organism=Citrus sinensis; type=EST; length=734bp
GAGGCTATTTTATATGCTTTCAAGAAACAAATATATGACATACCTTGCTG
CATAAATATCATTAATCATCCTTCAGTTCTTGTATTTCATTGTTTCTTTC
TCAAAACCAACAGTAGGAAATCGTTTTGCGTACACCTCGACTTTGTCTCG
GAGGTTTGAAATCTCAGATTGAATGCTTTCATCTGACATCAAAGTTGCTA
CAAAATCCTTCAACTTTGTTCCTTTAGTATCACCCTTGATCTTTAATGCC
AACTTCACAGCTGCATTGAAGAACTCAGCGACCTTTTCAAAATCTTCCTC
AACAAACCCCCTAGATGTGAGGGCTGGGGTTCCCATGCGGATGCCACCAG
GAACCATAGCAGACACGTCACCAGGAACAGTGTTTTTGTTGGCTGCAATA
TGAACTGATTCCAAAACCTTTTCAACTCTTGATCCGTCAATACCCTTGTT
TCTCAAGTTCACCAAGACTAGATGGTTCTCAGTTCCACCAGATACCAGAT
CATAACCTCTCTCTAGCAAACTCTGTGCAAACTTTGAAGAATTGCTGAGA
ACTTGCTCCTGGTAGGCCTTGTATTCAGGGGTCTTTACCTGCTTAAGTGC
GACAGCTAATCCTGATATGGTGTGATTATGTGGACCACCTTGAAGTCCAG
GGAAAACTGCCTGATTAATTTTTGTCTTCATAGGGCATACATCACTTCTT
GTCCTTGTTTATTAATCTCTTTAACCCCCTTCCT
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