CN184810

Overview
NameCN184810
Unique NameCN184810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3867 contig Csv1_Contig3867:679..1512. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: PM34_MOUSE (Peroxisomal membrane protein PMP34 OS=Mus musculus GN=Slc25a17 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.128e-18
Identity = 65/211 (30.81%), Postives = 104/211 (49.29%), Query Frame = 2
Query:   65 SVGKNMXXXXXXXXXXXXXXNPLWVVKTRLQTQGMR---SNVVP--YKSILSALRRIAHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRS-----RLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLPPDKNH 667
            S GK++               PLWVV TRL+ QG +    +++P  YK I+ A  +I  +EG+  L++G  PSL  V + AIQF  YE +K  + KK      KL+   + I  +IAK +A+ +TYP + V+S     R +   +NR +      V+  + +  ++ G  G Y+G    LL+T  +A + F  YE + +    V+     H
Sbjct:  100 STGKDLVVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIIPTNYKGIIDAFHQIIRDEGILALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKR----MKLSSLDVFIIGAIAKAIATTVTYPMQTVQSILRFGRHRLNPENRTLG-SLRNVLSLLHQRVKRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAATFTVMGLKSTH 305          
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: UCPB_DICDI (Mitochondrial substrate carrier family protein ucpB OS=Dictyostelium discoideum GN=ucpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.473e-18
Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  125 NPLWVVKTRLQTQGMRSNVVPYKSILSALRRIAHEEGMRGLYSGILPSLAGVSHV-AIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSI-AKVLASVITYPHEVVRSRLQEQG-QNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQ 628
            +P  ++K R+Q     S  V Y SI SA + I  +EG++GL+ G+ P+    + + A Q P+Y+ IKH +       VD L    + I SSI A ++AS+ T P ++V++R+  Q   +  V + Y    DC KK FQ EG  G Y+G   N  R  P  ++TF  YE ++
Sbjct:  122 SPTDLIKVRMQAS---SKGVKYDSISSAFKEIIAKEGIKGLWKGVGPTTQRAALLTASQIPSYDHIKHMILDHGIIQVDGLQ---VHIVSSIFAGLIASITTSPVDLVKTRIMNQPFDSNGVGLIYKSSYDCFKKTFQSEGISGLYKGFLPNWFRIGPHTIVTFILYEYLR 286          
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: YBC9_SCHPO (Uncharacterized mitochondrial carrier C27B12.09c OS=Schizosaccharomyces pombe GN=SPBC27B12.09c PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.282e-18
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 2
Query:   53 NSQLSVGKNMXXXXXXXXXXXXXXNPLWVVKTRLQTQGMRSNVVPYKSILSALRRIAHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYE 619
            N ++SV + +              NP+WVVK+R+      S  V Y +       +   EG+RG Y+G  PSL GVS  A+QF AYE++K +  ++  T +D       +  S+ +KV A+V  YP  V+R+RLQ           +  +++ V + ++ +G  GFY+G   +LLR  P   ITF  YE
Sbjct:   93 NGEISVLQTLCSSGFAGCIVAALTNPIWVVKSRIL-----SKRVNYTNPFFGFYDLIKNEGLRGCYAGFAPSLLGVSQGALQFMAYEKLKLWKQRR-PTSLD------YIFMSAASKVFAAVNMYPLLVIRTRLQVMRS------PHRSIMNLVLQTWRLQGILGFYKGFLPHLLRVVPQTCITFLVYE 263          
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: FLX1_YEAST (Mitochondrial FAD carrier protein FLX1 OS=Saccharomyces cerevisiae GN=FLX1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.282e-18
Identity = 51/168 (30.36%), Postives = 93/168 (55.36%), Query Frame = 2
Query:  125 NPLWVVKTRLQTQGMRSNVVPYKSILSALRRIAHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKK---DDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYE 619
            NP+WV+KTR+ +    +    Y S+ + ++++   +G +GL+ G++P+L GVS  A+ F  Y+ +K    ++   +  D+   N  +I I +S+ K+++  + YP ++++S LQ    N     Q   +   +K +   +GF G Y+G + NL+R  PS  ITF  YE
Sbjct:  144 NPIWVIKTRIMSTSKGAQGA-YTSMYNGVQQLLRTDGFQGLWKGLVPALFGVSQGALYFAVYDTLKQRKLRRKRENGLDIHLTNLETIEI-TSLGKMVSVTLVYPFQLLKSNLQSFRANE----QKFRLFPLIKLIIANDGFVGLYKGLSANLVRAIPSTCITFCVYE 305          
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: PM34_HUMAN (Peroxisomal membrane protein PMP34 OS=Homo sapiens GN=SLC25A17 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.312e-18
Identity = 63/211 (29.86%), Postives = 105/211 (49.76%), Query Frame = 2
Query:   65 SVGKNMXXXXXXXXXXXXXXNPLWVVKTRLQTQGMR---SNVVP--YKSILSALRRIAHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRS-----RLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLPPDKNH 667
            + GK++               PLWVV TRL+ QG +    ++VP  YK I+ A  +I  +EG+  L++G  PSL  V + AIQF  YE +K  + KK      KL+   + I  ++AK +A+ +TYP + V+S     R +   +NR +      ++  + +  ++ G  G Y+G    LL+T  +A + F  YE + +    V+   + H
Sbjct:  100 TTGKDLVVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYKGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKR----MKLSSLDVFIIGAVAKAIATTVTYPLQTVQSILRFGRHRLNPENRTLG-SLRNILYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAATFTVMGLKRAH 305          
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: CMC2_HUMAN (Calcium-binding mitochondrial carrier protein Aralar2 OS=Homo sapiens GN=SLC25A13 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17
Identity = 55/169 (32.54%), Postives = 91/169 (53.85%), Query Frame = 2
Query:  125 NPLWVVKTRLQTQGMRSNVVPYKSILSALRRIAHEEGMRGLYSGILPS-LAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQ 628
            NPL +VK RLQ  G      P  S LS +R +    G  G+Y G     L  +   AI FP Y  +K   A +D     +++PGS+++A +IA + A+ +  P +V+++RLQ     R     Y+GV+DC +K+ ++EG    ++G    + R++P   +T  +YE++Q
Sbjct:  447 NPLEIVKIRLQVAG-EITTGPRVSALSVVRDL----GFFGIYKGAKACFLRDIPFSAIYFPCYAHVKASFANEDG----QVSPGSLLLAGAIAGMPAASLVTPADVIKTRLQVAA--RAGQTTYSGVIDCFRKILREEGPKALWKGAGARVFRSSPQFGVTLLTYELLQ 604          
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: TPC1_EMENI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Emericella nidulans GN=tpc1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.629e-17
Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  128 PLWVVKTRLQTQGMRSNVVPYKSILSALRRIAHEEGMRGLYSGILPSLAG-VSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSI-AKVLASVITYPHEVVRSRLQEQGQNRKVDV-----QYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYE 619
            PL +++TR   QG   N V Y+S+ ++LR IA  EG  G + G   ++   V ++ + F  YE ++  MA   +     L PGS   A+ I A VLA    +P ++VR RLQ QG  R + V     +Y GV + +  +F+ +G  G YRG   +L++  P++ +T  +YE
Sbjct:  142 PLDLLRTRFAAQGSGDNRV-YESLFASLRDIAKTEGTVGFFRGCSAAVGQIVPYMGLFFATYEALRPVMATAPELSPIPLPPGSGDAAAGIVASVLAKTGVFPLDLVRKRLQVQGPTRALYVHRNIPEYRGVFNTMGLIFRTQGLRGLYRGLTVSLVKAAPASAVTMWTYE 311          

HSP 2 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 61/202 (30.20%), Postives = 98/202 (48.51%), Query Frame = 2
Query:  128 PLWVVKTRLQTQGMRSNVVP----------YKSILSALRRIAHEEGMRGLYSGILPS-LAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRL--QEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLPPDKNHSQIQPKSGE 694
            PL VVK RLQ Q + S   P          YK  LS ++ I  EEG+ GL+ G +P+ L  V +  IQF  Y      +A+ D   + +  P    I+ ++   +A+  TYP +++R+R   Q  G NR  +  +A + D  K     EG  GF+RGC+  + +  P   + F +YE ++  +     P+ +   + P SG+
Sbjct:   34 PLDVVKIRLQLQ-IHSLSDPTSHAHITGPVYKGTLSTIKTILREEGLTGLWKGNIPAELLYVCYGGIQFTTYRTTTQLLAQLDPHRLPQ--PIESFISGALGGGIATAATYPLDLLRTRFAAQGSGDNRVYESLFASLRDIAK----TEGTVGFFRGCSAAVGQIVPYMGLFFATYEALRPVM--ATAPELSPIPLPPGSGD 226          
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: CMC2_MOUSE (Calcium-binding mitochondrial carrier protein Aralar2 OS=Mus musculus GN=Slc25a13 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.190e-17
Identity = 56/169 (33.14%), Postives = 90/169 (53.25%), Query Frame = 2
Query:  125 NPLWVVKTRLQTQGMRSNVVPYKSILSALRRIAHEEGMRGLYSGILPS-LAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQ 628
            NPL +VK RLQ  G      P  S LS +R +    G  G+Y G     L  +   AI FP Y  +K   A +D     +++PGS+++A +IA + A+ +  P +V+++RLQ     R     Y GV DC +K+ ++EG    ++G A  + R++P   +T  +YE++Q
Sbjct:  448 NPLEIVKIRLQVAG-EITTGPRVSALSVVRDL----GFFGIYKGAKACFLRDIPFSAIYFPCYAHVKASFANEDG----QVSPGSLLLAGAIAGMPAASLVTPADVIKTRLQVAA--RAGQTTYNGVTDCFRKILREEGPKALWKGVAARVFRSSPQFGVTLLTYELLQ 605          
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: MCFL_DICDI (Mitochondrial substrate carrier family protein L OS=Dictyostelium discoideum GN=mcfL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.084e-17
Identity = 55/200 (27.50%), Postives = 99/200 (49.50%), Query Frame = 2
Query:   35 RTHGDGNSQLSVGKNMXXXXXXXXXXXXXXNPLWVVKTRLQTQGMRSNVVPYKSILSALRRIAHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSF 634
            + H D ++ +S+G+ M               P+  VK++LQ Q   + V  Y   +  +++I    G+RGLY  ++P+    + +   F  YE  + Y+ ++D +    +  G   IA  IA     +  +P +V+RSR+     N     +Y G++DC K +++ +G  GF++G +  LLRT P+   TF +YE +  F
Sbjct:   94 KIHTDKSTPISLGEIMVSGAITGWIVSFVACPIETVKSKLQVQ--YTGVKLYNGPIDCIKKI----GIRGLYKALIPTGFQRNSLYAYFGCYELAQRYLRREDGS----MTMGRSFIAGGIAGTGFWLTNFPFDVIRSRIMTMPYNESPP-RYKGMIDCAKHIYRVDGLKGFWKGFSPCLLRTFPANGATFVAYECVMKF 282          
BLAST of CN184810 vs. ExPASy Swiss-Prot
Match: MCFI_DICDI (Mitochondrial substrate carrier family protein I OS=Dictyostelium discoideum GN=mcfI PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.379e-16
Identity = 53/172 (30.81%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  125 NPLWVVKTRLQTQGMRSNVVPYKSILSALRRIAHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKD-DTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFL 637
            NP WV+K RL T         Y  +  A + I   EG+ G + G+  S  GVS    QF +YE I + M + +   +  +L+ G+ + A   A+++A V+TYP+ ++RS LQ +         Y  + + VK +++  G  GFY+G   NL R+ P A       E  +  L
Sbjct:  174 NPFWVLKIRLATSKK------YSGMKHAFQSILRSEGVGGFWKGVGVSFIGVSEGLFQFVSYEYILNQMKESNLKMNGGELSVGNYLFAGGTARLIAGVLTYPYLLIRSSLQSE------TCPYKSMSEAVKGIYKTNGIKGFYKGIGPNLARSIPPAAFMLYIVEFFRDTL 333          
The following BLAST results are available for this feature:
BLAST of CN184810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
PM34_MOUSE1.128e-1830.81Peroxisomal membrane protein PMP34 OS=Mus musculus... [more]
UCPB_DICDI1.473e-1835.09Mitochondrial substrate carrier family protein ucp... [more]
YBC9_SCHPO3.282e-1832.28Uncharacterized mitochondrial carrier C27B12.09c O... [more]
FLX1_YEAST3.282e-1830.36Mitochondrial FAD carrier protein FLX1 OS=Saccharo... [more]
PM34_HUMAN7.312e-1829.86Peroxisomal membrane protein PMP34 OS=Homo sapiens... [more]
CMC2_HUMAN2.779e-1732.54Calcium-binding mitochondrial carrier protein Aral... [more]
TPC1_EMENI3.629e-1733.92Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
CMC2_MOUSE6.190e-1733.14Calcium-binding mitochondrial carrier protein Aral... [more]
MCFL_DICDI8.084e-1727.50Mitochondrial substrate carrier family protein L O... [more]
MCFI_DICDI1.379e-1630.81Mitochondrial substrate carrier family protein I O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184810 ID=CN184810; Name=CN184810; organism=Citrus sinensis; type=EST; length=834bp
GAGGGCAGTTTATGAGCGATTAAAAGGTCTTCTCCGAACACATGGGGATG
GCAATAGTCAACTCTCAGTTGGGAAAAATATGATAGCTGCAGCTGGTGCT
GGGGCTGCTACAGCCATCGCAACTAATCCACTGTGGGTTGTGAAGACCAG
ACTCCAAACTCAGGGAATGAGATCAAATGTGGTTCCCTACAAAAGCATAC
TTTCTGCTTTGAGAAGGATTGCTCATGAAGAAGGCATGCGAGGGCTATAT
AGTGGCATTCTGCCTTCGTTGGCTGGAGTTAGTCATGTTGCTATTCAGTT
TCCTGCATATGAGAGAATCAAGCATTACATGGCCAAAAAGGATGACACAG
ATGTTGATAAGCTAAATCCTGGAAGTATTATGATTGCTTCTTCAATAGCA
AAAGTACTTGCCTCTGTAATTACTTACCCACATGAGGTTGTACGTTCAAG
GCTTCAAGAGCAAGGGCAGAACAGAAAGGTTGATGTACAATATGCAGGCG
TTGTTGATTGTGTCAAGAAGGTATTCCAAAAGGAAGGTTTCCCTGGCTTT
TACCGTGGCTGTGCGACAAATCTATTGAGAACAACTCCATCTGCTGTAAT
TACGTTTACCAGTTATGAGATAATACAGAGCTTCTTGCTGCGAGTTCTAC
CTCCGGACAAGAATCATTCACAAATCCAGCCTAAATCTGGTGAGCATGTC
AAGCCTCAGCAGAAAATCGATGAAGCTGGGGCTGAAGAAAACGATACTTT
GCGGCAATCACAAATCCAATCAAACAAACTGACTCCCTCAATTCCTCTCG
GAAGTAAGGATCAGCTAACCGCGAGACACTGACC
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