CN184805

Overview
NameCN184805
Unique NameCN184805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184805_ssr443 microsatellite CN184805_ssr443:443..454. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:175..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.850e-21
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  114 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 389
            A+ CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I  +N N AA +P +C V++PY ISP+ DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.303e-20
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  102 PVT-NAI-TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 392
            P+T NA+ +CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+ A +++ PG+N   AAGLP  C V+IPYKIS +T+C+ VR
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.223e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  114 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 392
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.223e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  114 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 392
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.468e-20
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  102 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 389
            P  + I CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A + I G+N ++ A LP  CGVSIPY IS +T+C  +
Sbjct:   21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.458e-19
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  114 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 389
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.458e-19
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  114 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 389
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.210e-19
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  114 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 389
            AI CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I  +N + A  +P +CGV++PY IS N DCSRV
Sbjct:   23 AIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18
Identity = 45/92 (48.91%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  114 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 389
            AI C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ ACNCLK    +IPGIN + A  LP +CGV+I    S   DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CN184805 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.635e-18
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  114 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRVR 392
            AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++   +NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CN184805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_HORVU5.850e-2147.83Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP2_ARATH1.303e-2053.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP_AMACA2.223e-2048.94Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP2.223e-2048.94Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPC_ARATH6.468e-2047.92Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_ORYSJ2.458e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI2.458e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT3.210e-1947.83Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTPB_ARATH1.593e-1848.91Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP5_ARATH4.635e-1852.13Non-specific lipid-transfer protein 5 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184805 ID=CN184805; Name=CN184805; organism=Citrus sinensis; type=EST; length=564bp
GAGGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAAAATCCTCATG
GCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGC
CCCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTC
CATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGC
TGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCG
CCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCA
TCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATT
CCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTG
AGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATA
AATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGT
GTGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATAT
TAAATATGTAAACG
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