CN184798

Overview
NameCN184798
Unique NameCN184798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM4_BOVIN (Secretory carrier-associated membrane protein 4 OS=Bos taurus GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 1
Query:  406 PFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 696
            P  P  + + S EIPI  Q L    +  W      L  N++A +  WI GG    F LA ++ LL  P  YV W+RP Y+A R+DS+  F  FF  +
Sbjct:   16 PLKPCFYQNFSDEIPIEHQVLVKRIYRLWLFYCATLGVNLVACLAWWIAGGSGANFGLALLWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIF 112          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM2_HUMAN (Secretory carrier-associated membrane protein 2 OS=Homo sapiens GN=SCAMP2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 55/223 (24.66%), Postives = 94/223 (42.15%), Query Frame = 1
Query:  121 DPNPFDEEEVNPFSNGPAAPASR----SQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERE--LASWEADLXXXXXXXXXXXXAIVK---------AGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVK--IFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCI 720
            D NPF +  V   +N P    +     S+  + T+ P+   Q  G++    L    EP +   +  +++ +A L             + +         A +     NWPP        P  + D S EIP   QR+  + +  W    + L  N++A +  W  G   K   F L+ ++ L+  P +++ WYRP+Y+A R+D++  F  FF  +   IG  I
Sbjct:   14 DVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVT--QLPGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERKERELQNTVANLHVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLA-WFSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233          
BLAST of CN184798 vs. ExPASy Swiss-Prot
Match: SCAM2_MOUSE (Secretory carrier-associated membrane protein 2 OS=Mus musculus GN=Scamp2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 55/208 (26.44%), Postives = 82/208 (39.42%), Query Frame = 1
Query:  127 NPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIP-----LDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVK--IFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIG 711
            NPF E   N  +  PA  A     P+V    +   Q     V        L    E  +K  EL   E +L                A +   D NWPP        P  + D S EIP   QR+  + +  W    + L  N++A +  W          F L+ ++ L+  P +++ WYRP+Y+A R+D++  F  FF  +   IG
Sbjct:   38 NPFSE--TNAATTVPATQAPGPSQPAVLQPSVEPAQPTPQAVAAAAQAGLLRQQEELDRKAAELERKERELQN------------TAANLHVRDNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLA-WFTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIG 230          
The following BLAST results are available for this feature:
BLAST of CN184798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SCAM4_BOVIN6.116e-1237.11Secretory carrier-associated membrane protein 4 OS... [more]
SCAM2_HUMAN2.324e-1124.66Secretory carrier-associated membrane protein 2 OS... [more]
SCAM2_MOUSE3.964e-1126.44Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184798 ID=CN184798; Name=CN184798; organism=Citrus sinensis; type=EST; length=722bp
GAGGCAACTAATAGCAGTGTTAGTGAATTTGCGAAGTTAGGTGCAAAATT
TAGGGATCTGAAAGAAAGAAAAAAACCAAAAAAAAAGAAGAAAAAACACG
AATCAATGAATCGCCACCACGACCCAAATCCCTTCGATGAAGAAGAGGTC
AATCCATTTTCGAATGGCCCGGCTGCTCCTGCATCAAGGTCACAGGTTCC
TTCTGTGACATCTGAACCTATTGGATTTGGACAGAAATATGGGGCGACAG
TTGATATTCCACTAGATAATATGAACGAGCCTAAGAAAAAAGAGAGAGAG
CTTGCATCATGGGAAGCAGATCTTAAAAGGAGGGAAAAGGAAATAAAACG
AAGAGAAGAGGCTATTGTCAAAGCTGGCGTTCCCACAGACGATAGAAATT
GGCCACCTTTTTTTCCAATTATTCATCATGACATATCGAAGGAGATACCA
ATTCATGCTCAAAGGCTGCAGTATCTTGCTTTTGCTAGTTGGTTTGGTAT
AGTTCTCTGTCTTGTATTCAATGTAATTGCCGTGATTGTCTGTTGGATTA
AAGGCGGTGGTGTCAAAATCTTTTTCCTTGCAACAATTTATGCTTTGCTT
GGAGTGCCTATGTCATATGTTCTATGGTACAGGCCTCTTTATCGAGCAAT
GAGGACGGATAGTGCATTGAAGTTCAGCTGGTTTTTCCTGTTCTACTTGA
TCCACATCGGTTTTTGTATCTT
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