CN184796

Overview
NameCN184796
Unique NameCN184796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT_PSESM (Adenine phosphoribosyltransferase OS=Pseudomonas syringae pv. tomato GN=apt PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.703e-34
Identity = 72/161 (44.72%), Postives = 101/161 (62.73%), Query Frame = 1
Query:  247 AGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 729
            +   S IR + DFPKPG++F+DIT L    KA R  ID FV+RY D + S +  ++ARGF+ G  +A  +    V  RK  KLP +V+SE Y  EYG+  +E+H  ++  G   ++ DDL+ATGGTL AA  L+ R+G  V E A +I+LPEL G +RL +
Sbjct:    6 SNFKSLIRPVVDFPKPGVVFRDITPLFQSPKATRQVIDSFVQRYIDADFSHIGVMDARGFLIGSVVAYQLNKPLVLFRKQGKLPADVLSEAYQTEYGEAYLEVHADSLCEGNSVIMFDDLIATGGTLIAAANLIRRMGAQVHEAAAIIDLPELGGSKRLND 166          
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT_XANC5 (Adenine phosphoribosyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=apt PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.836e-34
Identity = 78/167 (46.71%), Postives = 106/167 (63.47%), Query Frame = 1
Query:  256 SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRER-LGEKPLFVLVS 753
            S  IR I DFPK GI+F+DIT LL D   F   +D   + ++   +  V GIEARGFI G  +A  +   FVP+RKP KLPG  + +EY+LEYG D +EMH  A+  G R LIVDD++ATGGTL AA+ L  ++ + VV  A ++EL  L+GR++   + PL   +S
Sbjct:   19 SERIRDIADFPKQGIVFKDITPLLSDGPDFASALDEMAQPWRTTPLDAVLGIEARGFILGAALARELRTGFVPVRKPGKLPGRTLIQEYALEYGTDRIEMHEDALPRGARVLIVDDVLATGGTLRAALGLAAQLELEVVGAAVLVELQVLQGRQKWANDVPLLATLS 185          
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT_LACC3 (Adenine phosphoribosyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=apt PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.836e-34
Identity = 71/165 (43.03%), Postives = 107/165 (64.85%), Query Frame = 1
Query:  265 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS*T 759
            I  + D+P+PGI+F+DI+ L+ D KA+    D      +DK + ++ G EARGFI G P+A  +G  F P RK  KLP   +   Y LEYG+  + +H  A++ G+R L+ DDL+ATGGT++A IRL+E++G  VV  A +IEL +L GR+++ +  +F L+S T
Sbjct:    9 IASVQDYPEPGIIFRDISPLMADGKAYAAATDEIAAYAQDKGVEMIVGPEARGFIVGCPVAYKLGIGFAPARKKGKLPRPTVKASYDLEYGEATLYLHKDAIKPGQRVLVCDDLLATGGTIAATIRLVEQLGGIVVGTAFLIELSDLHGRDKIKDYDMFTLMSYT 173          
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT_YARLI (Adenine phosphoribosyltransferase OS=Yarrowia lipolytica GN=APT1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.316e-34
Identity = 73/171 (42.69%), Postives = 112/171 (65.50%), Query Frame = 1
Query:  253 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFV----ERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 753
            + + +R   DFP  GI+F+DI  +  D K+F+  ID F     + + DK I V+ G++ARGF+FGP +ALAIGA FVP+RK  KLPG+ +  E+  EYGKDV E+   A++ G+  ++VDD++ATGG+ + A  L+ ++   V+E   ++EL  LKGR++L   P + L+S
Sbjct:   10 LKAKLRQYQDFPSKGIVFEDILPIFQDPKSFQQLIDAFKLHIKDTFGDKKIDVIVGLDARGFLFGPTLALAIGAAFVPVRKQGKLPGKTVHAEFQKEYGKDVFEIQEDAIKPGQTVIVVDDIIATGGSAACAGDLVTKLKGEVLEFIFILELLFLKGRDKLC-APAYTLLS 179          
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT_CLOPH (Adenine phosphoribosyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=apt PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.316e-34
Identity = 68/153 (44.44%), Postives = 104/153 (67.97%), Query Frame = 1
Query:  265 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 723
            +R IPDFP+ GI+F+D+T++L D  + + +ID   E     +  V+ G E+RGFIFG PIA  +   F+P+RK  KLP E +  EY+LEYG   +EMH  +++ G++ +I+DDL+ATGGT+ A  +L+E++G  VV+   ++EL  L GRE+L
Sbjct:    8 VRSIPDFPEEGIIFRDVTSVLQDKDSLKMSIDQMQENLNGLDFDVIVGPESRGFIFGVPIAYNLNKAFIPVRKKGKLPCETVEMEYALEYGTATIEMHKDSIKPGQKVVIIDDLIATGGTIEAITKLIEQLGGEVVKIVFLMELEGLMGREKL 160          
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT2_METVS (Adenine phosphoribosyltransferase 2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=apt2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.316e-34
Identity = 70/153 (45.75%), Postives = 103/153 (67.32%), Query Frame = 1
Query:  265 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 723
            IR+I DFPK GI F+D+T +L D K+ + T     +  +DKNI V+ G EARGF+FG  +A  +   FVP+RKP KLP +  S +Y+LEYG D +E+H  +++ G+   +VDDL+ATGGT+    +L+E++G +V   + VIEL  L GR++L
Sbjct:    7 IRIIDDFPKKGISFKDVTPILKDPKSMKHTTKEITKYLEDKNIDVIVGPEARGFLFGILVAQELDLGFVPVRKPGKLPFKTFSVDYALEYGLDRLEIHSDSIEKGQNVAVVDDLLATGGTVLGVTKLVEKIGGNVSALSFVIELTNLNGRDKL 159          
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT_NOCSJ (Adenine phosphoribosyltransferase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=apt PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.250e-34
Identity = 78/179 (43.58%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  238 PRIAGISSAIRVI---PDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN----ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 753
            P   G+S A+ +I   PDFP+PGI+F+DIT LL +  A    +       +D+     +  V G+E+RGFI G P+ALA+G  FVP+RK  KLP    +  Y+LEYG+  +E+H  A++ G+R L+VDD++ATGGT  A I L+E+ G  V   A ++EL  L GRE LG  PL  L++
Sbjct:    6 PEAPGLSEALALIADVPDFPQPGILFKDITPLLAEHAALEAVVAALAAPGRDQTGAPVVDKVLGMESRGFILGAPVALALGVGFVPVRKAGKLPRATYAVSYALEYGEATLEVHQDALEPGDRVLLVDDVLATGGTARATIDLVEKCGASVHAVAILMELGFLPGREALGTVPLTTLLT 184          
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT_HELHP (Adenine phosphoribosyltransferase OS=Helicobacter hepaticus GN=apt PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.250e-34
Identity = 71/159 (44.65%), Postives = 112/159 (70.44%), Query Frame = 1
Query:  253 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERA--LIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 723
            I+ +IR + ++ KPG++F+DITTL+ D + F++ I++   RY++++I  +A IEARGFIFG  +A A+G  FVP+RK  KLP   ISE+Y+LEYG D + +H  A +  + A  +++DDL+ATGGT  A+++L++ +G   VE A VI L  L+G ++L
Sbjct:    6 IADSIRAVYNY-KPGVIFRDITTLIGDAEVFKEVINILRSRYENQSIDFIAAIEARGFIFGSALAYALGIGFVPIRKKGKLPYNTISEKYTLEYGTDELHIHTDAFRDKKNAKVVLIDDLIATGGTAEASVKLIKSIGAQCVEAAFVINLKGLEGEKKL 163          
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT_GRAFK (Adenine phosphoribosyltransferase OS=Gramella forsetii (strain KT0803) GN=apt PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.250e-34
Identity = 70/157 (44.59%), Postives = 102/157 (64.97%), Query Frame = 1
Query:  253 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 723
            + S +R I DFPK G+ ++DIT LLLD +A R  + LF++      I  V GIE+RGF F   +A  + A F+P+RKP KLP     E Y LEYG D +E+H  A++ GE+ L+ DD++ATGGT +A  +L+E+ G  +V+C  ++EL  LKG ++L
Sbjct:    3 LKSYVREIADFPKKGVSYKDITPLLLDPEAMRLAVKLFMKNLPHGKIDKVVGIESRGFFFATMLAEKLNAGFIPVRKPGKLPHRTHKENYDLEYGSDSLEIHEDAIKKGEKVLLHDDVLATGGTAAATCKLIEKCGGEIVQCNFLVELEFLKGVDKL 159          
BLAST of CN184796 vs. ExPASy Swiss-Prot
Match: APT_CLOCE (Adenine phosphoribosyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=apt PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.250e-34
Identity = 76/158 (48.10%), Postives = 104/158 (65.82%), Query Frame = 1
Query:  253 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVE-RYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 723
            +   +R + DFPK GI F DITT+L D +AFR+ ++ F     K  +  ++ G E+RGFIFG P+A  +   FVP+RK  KLP + + EEY LEYGKD +E+H  A+  GE+ LIVDDL+ATGGT  A I+L+E++G  V      IEL  LKGR++L
Sbjct:    3 LKDKLRHVMDFPKEGIDFIDITTVLQDPEAFRECMESFKTLAEKMGDFDLIVGSESRGFIFGAPLAYRMEKGFVPVRKKGKLPYKTVREEYDLEYGKDELEIHSDAIAPGEKVLIVDDLLATGGTTEANIKLVEKLGGEVTGIVYFIELMSLKGRDKL 160          
The following BLAST results are available for this feature:
BLAST of CN184796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_PSESM3.703e-3444.72Adenine phosphoribosyltransferase OS=Pseudomonas s... [more]
APT_XANC54.836e-3446.71Adenine phosphoribosyltransferase OS=Xanthomonas c... [more]
APT_LACC34.836e-3443.03Adenine phosphoribosyltransferase OS=Lactobacillus... [more]
APT_YARLI6.316e-3442.69Adenine phosphoribosyltransferase OS=Yarrowia lipo... [more]
APT_CLOPH6.316e-3444.44Adenine phosphoribosyltransferase OS=Clostridium p... [more]
APT2_METVS6.316e-3445.75Adenine phosphoribosyltransferase 2 OS=Methanococc... [more]
APT_NOCSJ8.250e-3443.58Adenine phosphoribosyltransferase OS=Nocardioides ... [more]
APT_HELHP8.250e-3444.65Adenine phosphoribosyltransferase OS=Helicobacter ... [more]
APT_GRAFK8.250e-3444.59Adenine phosphoribosyltransferase OS=Gramella fors... [more]
APT_CLOCE8.250e-3448.10Adenine phosphoribosyltransferase OS=Clostridium c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184796 ID=CN184796; Name=CN184796; organism=Citrus sinensis; type=EST; length=763bp
GAGGAAGGCGTGATGCATGCTGCAGCTTCACTTCTTAACTCTTCAAACCT
CTCCCTTCGCTTTGCATCTCAAACGCAGACACGACTCTCTCCCTGGATCG
CCGCTCCCTCCTCTGTTCGCCTACCGTTGAACCGCTCGCAAAATTACAGA
ATTGCACTCCCTCCTCTGCATTCCACCGTGAGTGGTGACTCGACGCAACC
TCAACAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTG
GGATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATT
ATGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGAGA
TACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTG
TTGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTG
GCTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGG
GGAGGTTATTTCCGAAGAGTATTCCTTGGAATATGGAAAAGATGTAATGG
AGATGCATGTAGGTGCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGAC
GATCTAGTTGCAACTGGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGA
GCGAGTTGGGGTGCATGTGGTTGAGTGTGCATGCGTGATTGAACTGCCAG
AGCTAAAGGGTCGGGAACGGCTGGGAGAGAAACCACTATTTGTTCTTGTA
AGCTAAACTTGAC
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