CN184793

Overview
NameCN184793
Unique NameCN184793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig668 contig Csv1_Contig668:196..580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_BACLD (Ribosome-recycling factor OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=frr PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.030e-15
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL+K+V K +E+ KVAVRNIRRDA    +KL+K  +++ED ++  + D+QKLTDEY+ KID I K
Sbjct:  108 ERRKELAKLVKKYSEDAKVAVRNIRRDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SYNY3 (Ribosome-recycling factor OS=Synechocystis sp. (strain PCC 6803) GN=frr PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.580e-15
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL KV  K AEEGKVA+RNIRRDA+    K +K   +SED  +DL  ++QKLTD+  K+ID +
Sbjct:  105 ERRKELVKVAGKLAEEGKVAIRNIRRDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDEL 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_CYAP4 (Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=frr PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.580e-15
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            +RRKEL K  +K AEEGKV++RN+RRDA+ + +K  K  +LSED VKDL   +QKLTD+Y+ K+D +
Sbjct:  105 DRRKELVKTASKLAEEGKVSIRNVRRDAVDSVKKQGKAGELSEDEVKDLQDKIQKLTDKYIAKVDGL 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.580e-15
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            ERRK+L ++V+K AEE KVAVRNIRRDA    +KLQK+ +++ED ++  + D+QKLTD Y+ KID   KQ
Sbjct:  108 ERRKDLVRLVSKTAEESKVAVRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQ 177          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SYMTH (Ribosome-recycling factor OS=Symbiobacterium thermophilum GN=frr PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/67 (55.22%), Postives = 53/67 (79.10%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERR+EL KVVAK+ EE +VA+RNIRRDA +  +KL+K+K +SED  K    ++QKLTD+Y+K++D +
Sbjct:  108 ERRRELVKVVAKRTEEQRVAIRNIRRDANEQIKKLEKDKAVSEDESKRAQDEVQKLTDKYIKEVDQL 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_ANASP (Ribosome-recycling factor OS=Anabaena sp. (strain PCC 7120) GN=frr PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            +RRKEL K+ AK AEEG+VA+RNIRRDA+ +  KL+K  ++SED  KD    LQKLT++Y  +ID +
Sbjct:  105 DRRKELVKIAAKYAEEGRVAIRNIRRDAVDSIRKLEKNAEVSEDEAKDQQDKLQKLTNKYTARIDEL 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_THEEB (Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL K  AK AE GKVA+RNIRRDA+   +K  K  +L+ED VKDL   +QKLTD+Y+ KID++
Sbjct:  105 ERRKELVKTAAKIAEGGKVAIRNIRRDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDAL 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_LISMO (Ribosome-recycling factor OS=Listeria monocytogenes GN=frr PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++    D+QKLTDE +K IDSI K
Sbjct:  108 ERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_LISMH (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=frr PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++    D+QKLTDE +K IDSI K
Sbjct:  108 ERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKSGDITEDDLRSYGEDVQKLTDESIKNIDSITK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_LISMF (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4b (strain F2365) GN=frr PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++    D+QKLTDE +K IDSI K
Sbjct:  108 ERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITK 176          
The following BLAST results are available for this feature:
BLAST of CN184793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RRF_BACLD5.030e-1556.52Ribosome-recycling factor OS=Bacillus licheniformi... [more]
RRF_SYNY38.580e-1556.72Ribosome-recycling factor OS=Synechocystis sp. (st... [more]
RRF_CYAP48.580e-1555.22Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_BACSK8.580e-1555.71Ribosome-recycling factor OS=Bacillus clausii (str... [more]
RRF_SYMTH1.121e-1455.22Ribosome-recycling factor OS=Symbiobacterium therm... [more]
RRF_ANASP1.121e-1455.22Ribosome-recycling factor OS=Anabaena sp. (strain ... [more]
RRF_THEEB1.464e-1459.70Ribosome-recycling factor OS=Thermosynechococcus e... [more]
RRF_LISMO1.464e-1457.97Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_LISMH1.464e-1457.97Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_LISMF1.464e-1457.97Ribosome-recycling factor OS=Listeria monocytogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184793 ID=CN184793; Name=CN184793; organism=Citrus sinensis; type=EST; length=385bp
ATTTCCACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAG
TATCAAAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTC
TGAGATTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTA
AACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCT
TCATATACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACA
TTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAA
CGCATCTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTT
TGGCCACAACCTTTGACAGTTCCTTCCTCCTTTCG
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