CN184793

Overview
NameCN184793
Unique NameCN184793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_LISMC (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=frr PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++    D+QKLTDE +K IDSI K
Sbjct:  108 ERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_PELTS (Ribosome-recycling factor OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=frr PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.911e-14
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERR EL KV+ K+AEEG+VA+RNIRRD  +  +  QK+ K+SED +K    ++QKLTD Y+K+IDS+
Sbjct:  108 ERRAELMKVIKKKAEEGRVAIRNIRRDTNEQLKSQQKDGKMSEDELKRSQDEVQKLTDRYIKEIDSL 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_LISIN (Ribosome-recycling factor OS=Listeria innocua GN=frr PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.911e-14
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++    D+QKLTDE +K IDSI K
Sbjct:  108 ERRKELVKEVKKEAEEAKVAVRNIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_ANATD (Ribosome-recycling factor OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=frr PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.911e-14
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL K V K AE+ KVA+RNIRR+AL  Y+K++K  +++ED++KD   D+QKL D+Y+++I+ +
Sbjct:  107 ERRKELVKQVKKMAEDAKVAIRNIRREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKL 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_EUBR3 (Ribosome-recycling factor OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=frr PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.496e-14
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L+K + K+ EE KVAVRNIRRDA+ + +K  KE+ +SED +K L  D QKLTD+++ K+D+
Sbjct:  107 ERRKDLAKDIKKKGEEAKVAVRNIRRDAIDSIKKTGKEEGISEDEIKGLEDDAQKLTDKFVAKVDA 172          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SYNP6 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 34/67 (50.75%), Postives = 51/67 (76.12%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            +RRKEL K+ AK AEEGKVA+RN+RRDA+ +  KL+K  ++SED+ +D    +QKLTD++  K++ +
Sbjct:  105 DRRKELVKLAAKYAEEGKVAIRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQL 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SYNE7 (Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC 7942) GN=frr PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 34/67 (50.75%), Postives = 51/67 (76.12%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            +RRKEL K+ AK AEEGKVA+RN+RRDA+ +  KL+K  ++SED+ +D    +QKLTD++  K++ +
Sbjct:  105 DRRKELVKLAAKYAEEGKVAIRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQL 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_LISW6 (Ribosome-recycling factor OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=frr PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++    D+QKLTDE +K ID+I K
Sbjct:  108 ERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_CALS8 (Ribosome-recycling factor OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=frr PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 34/67 (50.75%), Postives = 53/67 (79.10%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL K V K AE+ KVA+RNIRR+A+  Y+K++K  +++ED++KD   D+QKL D+Y+++I+ +
Sbjct:  107 ERRKELVKQVKKMAEDAKVAIRNIRREAIDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKL 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_THEPX (Ribosome-recycling factor OS=Thermoanaerobacter sp. (strain X514) GN=frr PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL K+V K+AEE KVAVR IRRDA  A +K++K  ++SED  K    ++QKLTD+Y+K+ID +
Sbjct:  107 ERRKELVKLVHKKAEEAKVAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKV 173          
The following BLAST results are available for this feature:
BLAST of CN184793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RRF_LISMC1.464e-1457.97Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_PELTS1.911e-1455.22Ribosome-recycling factor OS=Pelotomaculum thermop... [more]
RRF_LISIN1.911e-1457.97Ribosome-recycling factor OS=Listeria innocua GN=f... [more]
RRF_ANATD1.911e-1452.24Ribosome-recycling factor OS=Anaerocellum thermoph... [more]
RRF_EUBR32.496e-1454.55Ribosome-recycling factor OS=Eubacterium rectale (... [more]
RRF_SYNP63.261e-1450.75Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNE73.261e-1450.75Ribosome-recycling factor OS=Synechococcus elongat... [more]
RRF_LISW63.261e-1456.52Ribosome-recycling factor OS=Listeria welshimeri s... [more]
RRF_CALS83.261e-1450.75Ribosome-recycling factor OS=Caldicellulosiruptor ... [more]
RRF_THEPX4.258e-1456.72Ribosome-recycling factor OS=Thermoanaerobacter sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184793 ID=CN184793; Name=CN184793; organism=Citrus sinensis; type=EST; length=385bp
ATTTCCACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAG
TATCAAAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTC
TGAGATTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTA
AACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCT
TCATATACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACA
TTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAA
CGCATCTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTT
TGGCCACAACCTTTGACAGTTCCTTCCTCCTTTCG
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