CN184793

Overview
NameCN184793
Unique NameCN184793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_THEP3 (Ribosome-recycling factor OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=frr PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL K+V K+AEE KVAVR IRRDA  A +K++K  ++SED  K    ++QKLTD+Y+K+ID +
Sbjct:  107 ERRKELVKLVHKKAEEAKVAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKV 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_GEOTN (Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=frr PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            ERR+EL+K+V K +EE KVAVRNIRRDA    +KL+K  +++ED ++  + ++QKLTD ++ KID+I K+
Sbjct:  108 ERRRELAKLVKKYSEEAKVAVRNIRRDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKE 177          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SYNP2 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=frr PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.264e-14
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERR+EL K   K AEEGKVA+RNIRRDA+    K +K   +SED  + L  D+QK+TDE+  KID + K
Sbjct:  105 ERRQELVKTAGKLAEEGKVALRNIRRDAIDDVRKQEKNSDISEDESRSLQDDIQKVTDEFTTKIDDLLK 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SHEAM (Ribosome-recycling factor OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=frr PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.264e-14
Identity = 33/67 (49.25%), Postives = 55/67 (82.09%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERR++L KVV  +AE+G+VA+RN+RRDA  ++++L+KEK+ +ED+V+    ++QK+TD ++KKID +
Sbjct:  108 ERRRDLVKVVRAEAEQGRVAIRNVRRDANSSFKQLEKEKECTEDDVRRSEEEVQKITDLHIKKIDEL 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_DESVV (Ribosome-recycling factor OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=frr PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.264e-14
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = -2
Query:  190 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 384
            ERRK+L K+  K AEE KVAVRN+RRDA +  +KL+K K+LSED+++    D+QKLTD ++ K D
Sbjct:  109 ERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTD 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_DESVH (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=frr PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.264e-14
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = -2
Query:  190 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 384
            ERRK+L K+  K AEE KVAVRN+RRDA +  +KL+K K+LSED+++    D+QKLTD ++ K D
Sbjct:  109 ERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTD 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_BACHD (Ribosome-recycling factor OS=Bacillus halodurans GN=frr PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.264e-14
Identity = 36/65 (55.38%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  190 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 384
            ERR++L+K+V K AEE KVAVRNIRRDA    +K QK+ +L+ED+++ ++ D+QKLTD+Y+++ID
Sbjct:  108 ERRRDLTKLVKKSAEEAKVAVRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQID 172          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SHESW (Ribosome-recycling factor OS=Shewanella sp. (strain W3-18-1) GN=frr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.487e-14
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRK+  KVV  +AE G+VA+RN+RRDA+   +KL+K K+ +ED+V+    D+QK TD ++KK+D I
Sbjct:  108 ERRKDFIKVVRAEAEGGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDDVQKFTDAHIKKVDEI 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SHEPC (Ribosome-recycling factor OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=frr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.487e-14
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRK+  KVV  +AE G+VA+RN+RRDA+   +KL+K K+ +ED+V+    D+QK TD ++KK+D I
Sbjct:  108 ERRKDFIKVVRAEAEGGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDDVQKFTDAHIKKVDEI 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_MICAN (Ribosome-recycling factor OS=Microcystis aeruginosa (strain NIES-843) GN=frr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.487e-14
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            +RRKEL K+ AK AEEGKVA+RNIRRDA+ A  K +K  ++SED  +DL   +QK TD+++ KI+ +
Sbjct:  105 DRRKELVKLAAKLAEEGKVAIRNIRRDAIDAIRKREKGHEISEDESRDLQDQVQKSTDKFIAKIEDL 171          
The following BLAST results are available for this feature:
BLAST of CN184793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RRF_THEP34.258e-1456.72Ribosome-recycling factor OS=Thermoanaerobacter ps... [more]
RRF_GEOTN4.258e-1451.43Ribosome-recycling factor OS=Geobacillus thermoden... [more]
RRF_SYNP27.264e-1453.62Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SHEAM7.264e-1449.25Ribosome-recycling factor OS=Shewanella amazonensi... [more]
RRF_DESVV7.264e-1455.38Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_DESVH7.264e-1455.38Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_BACHD7.264e-1455.38Ribosome-recycling factor OS=Bacillus halodurans G... [more]
RRF_SHESW9.487e-1450.75Ribosome-recycling factor OS=Shewanella sp. (strai... [more]
RRF_SHEPC9.487e-1450.75Ribosome-recycling factor OS=Shewanella putrefacie... [more]
RRF_MICAN9.487e-1453.73Ribosome-recycling factor OS=Microcystis aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184793 ID=CN184793; Name=CN184793; organism=Citrus sinensis; type=EST; length=385bp
ATTTCCACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAG
TATCAAAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTC
TGAGATTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTA
AACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCT
TCATATACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACA
TTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAA
CGCATCTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTT
TGGCCACAACCTTTGACAGTTCCTTCCTCCTTTCG
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