CN184793

Overview
NameCN184793
Unique NameCN184793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_BUCA5 (Ribosome-recycling factor OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=frr PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            ERRK+L KV+   AE  ++ +RNIRRDA    ++L K+K +SEDN     S +Q +T+EY+KKID I ++
Sbjct:  108 ERRKQLIKVIRGDAESSRIQIRNIRRDANDKVKRLLKDKIISEDNEHTSQSKIQIMTNEYIKKIDCILEK 177          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_BREBN (Ribosome-recycling factor OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=frr PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            ERRKEL K+  K  EE KVA+RNIRRDA    +KL+K   +SED+ +     +QK TD+++ ++D I K
Sbjct:  108 ERRKELVKLAGKGGEEAKVAIRNIRRDANDEIKKLEKAATISEDDSRRHQETIQKTTDKFIAEVDKIVK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_ALISL (Ribosome-recycling factor OS=Aliivibrio salmonicida (strain LFI1238) GN=frr PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRK L K+V  +AE G+VAVRNIRRDA    + L K+K++SED+ +    ++QKLTD  +K ID +
Sbjct:  108 ERRKSLVKIVRGEAENGRVAVRNIRRDANGDIKALLKDKEISEDDDRRTQDEIQKLTDIAVKNIDDV 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_ACIBY (Ribosome-recycling factor OS=Acinetobacter baumannii (strain AYE) GN=frr PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = -2
Query:  190 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 384
            E R+++ K+   +AE  KVA+RNIRRD L   + L KEK++SED+ +    D+QK+TD+Y+ ++D
Sbjct:  107 ETRRDMQKIARSEAENAKVAIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVD 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_ACIBT (Ribosome-recycling factor OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=frr PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = -2
Query:  190 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 384
            E R+++ K+   +AE  KVA+RNIRRD L   + L KEK++SED+ +    D+QK+TD+Y+ ++D
Sbjct:  107 ETRRDMQKIARSEAENAKVAIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVD 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_ACIBS (Ribosome-recycling factor OS=Acinetobacter baumannii (strain SDF) GN=frr PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = -2
Query:  190 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 384
            E R+++ K+   +AE  KVA+RNIRRD L   + L KEK++SED+ +    D+QK+TD+Y+ ++D
Sbjct:  107 ETRRDMQKIARSEAENAKVAIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVD 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_ACIB5 (Ribosome-recycling factor OS=Acinetobacter baumannii (strain AB0057) GN=frr PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = -2
Query:  190 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 384
            E R+++ K+   +AE  KVA+RNIRRD L   + L KEK++SED+ +    D+QK+TD+Y+ ++D
Sbjct:  107 ETRRDMQKIARSEAENAKVAIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVD 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_ACIB3 (Ribosome-recycling factor OS=Acinetobacter baumannii (strain AB307-0294) GN=frr PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = -2
Query:  190 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 384
            E R+++ K+   +AE  KVA+RNIRRD L   + L KEK++SED+ +    D+QK+TD+Y+ ++D
Sbjct:  107 ETRRDMQKIARSEAENAKVAIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVD 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_STAS1 (Ribosome-recycling factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=frr PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 31/70 (44.29%), Postives = 50/70 (71.43%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            ERRKEL K V K  E+ KVAVRN+RRD+    +K QK   ++ED+++  + D+QKLTD+ +K+++ + ++
Sbjct:  107 ERRKELVKDVKKIGEDAKVAVRNVRRDSNDELKKQQKNSDITEDDLRTQTDDVQKLTDDSIKEVEKLLEE 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_STACT (Ribosome-recycling factor OS=Staphylococcus carnosus (strain TM300) GN=frr PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            ERRKEL K V K  E  KV++RNIRRD+    +K +KE  +SED ++  + D+QK+TDE +K++D + ++
Sbjct:  107 ERRKELVKDVKKMGENAKVSIRNIRRDSNDDLKKDEKEGVISEDELRTGTDDVQKITDESIKEVDKVLEE 176          
The following BLAST results are available for this feature:
BLAST of CN184793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RRF_BUCA54.407e-1147.14Ribosome-recycling factor OS=Buchnera aphidicola s... [more]
RRF_BREBN4.407e-1147.83Ribosome-recycling factor OS=Brevibacillus brevis ... [more]
RRF_ALISL4.407e-1150.75Ribosome-recycling factor OS=Aliivibrio salmonicid... [more]
RRF_ACIBY4.407e-1144.62Ribosome-recycling factor OS=Acinetobacter baumann... [more]
RRF_ACIBT4.407e-1144.62Ribosome-recycling factor OS=Acinetobacter baumann... [more]
RRF_ACIBS4.407e-1144.62Ribosome-recycling factor OS=Acinetobacter baumann... [more]
RRF_ACIB54.407e-1144.62Ribosome-recycling factor OS=Acinetobacter baumann... [more]
RRF_ACIB34.407e-1144.62Ribosome-recycling factor OS=Acinetobacter baumann... [more]
RRF_STAS15.755e-1144.29Ribosome-recycling factor OS=Staphylococcus saprop... [more]
RRF_STACT5.755e-1145.71Ribosome-recycling factor OS=Staphylococcus carnos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184793 ID=CN184793; Name=CN184793; organism=Citrus sinensis; type=EST; length=385bp
ATTTCCACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAG
TATCAAAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTC
TGAGATTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTA
AACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCT
TCATATACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACA
TTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAA
CGCATCTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTT
TGGCCACAACCTTTGACAGTTCCTTCCTCCTTTCG
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