CN184793

Overview
NameCN184793
Unique NameCN184793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_THERP (Ribosome-recycling factor OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = -2
Query:  175 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 384
            ERR++L K+V ++ EE KVA+RNIRRDAL   ++L K K++SED+ +     LQ LT+ Y+ + D + KQ
Sbjct:  108 ERRRQLVKLVHEEVEETKVAIRNIRRDALADIKELLKNKEISEDDERRAEQRLQDLTNRYIAEADKLGKQ 177          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_RHOPT (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain TIE-1) GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ K L  ++QK TD  + +ID +
Sbjct:  109 ERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQL 175          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_RHOPA (Ribosome-recycling factor OS=Rhodopseudomonas palustris GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ K L  ++QK TD  + +ID +
Sbjct:  109 ERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQL 175          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_RHOP2 (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain HaA2) GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            +RRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ K L  ++QK TD  + +ID +
Sbjct:  110 DRRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKSHEISEDDQKRLDQEVQKATDSAISEIDQL 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_PSYA2 (Ribosome-recycling factor OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 29/66 (43.94%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            E R+++ K+   +AE  +V++RNIRRD +   ++L KEK++SED+    S D+QK+TD+Y++ IDS
Sbjct:  107 ETRRDMQKLARGEAENSRVSIRNIRRDMMNDIKELAKEKEISEDDEHRASDDIQKITDKYIETIDS 172          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_POLNA (Ribosome-recycling factor OS=Polaromonas naphthalenivorans (strain CJ2) GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL+KVV  + E  KVA+RN+RRDA    +KL K+K  SED+ +    ++QK TD ++  +D +
Sbjct:  109 ERRKELTKVVRAEGEHAKVAIRNLRRDANDGVKKLVKDKLASEDDERRSQEEIQKFTDRFIADVDKL 175          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_LEPCP (Ribosome-recycling factor OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL+KVV    E+ KVAVRN+RRDA    +KL K+K +SED+ +    ++QKLTD  + +ID +
Sbjct:  109 ERRKELTKVVRHAGEDSKVAVRNLRRDANDQAKKLLKDKLISEDDERRSVDEVQKLTDRVIAEIDRL 175          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_HELPY (Ribosome-recycling factor OS=Helicobacter pylori GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            E+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:  108 EQRKLIAKDAKAMGEKAKVAVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_HELPH (Ribosome-recycling factor OS=Helicobacter pylori (strain HPAG1) GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            E+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:  108 EQRKLIAKDAKAMGEKAKVAVRNIRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_HELP2 (Ribosome-recycling factor OS=Helicobacter pylori (strain P12) GN=frr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            E+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:  108 EQRKLIAKDAKAMGEKAKVAVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176          
The following BLAST results are available for this feature:
BLAST of CN184793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RRF_THERP7.517e-1147.14Ribosome-recycling factor OS=Thermomicrobium roseu... [more]
RRF_RHOPT7.517e-1149.25Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_RHOPA7.517e-1149.25Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_RHOP27.517e-1147.76Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_PSYA27.517e-1143.94Ribosome-recycling factor OS=Psychrobacter arcticu... [more]
RRF_POLNA7.517e-1146.27Ribosome-recycling factor OS=Polaromonas naphthale... [more]
RRF_LEPCP7.517e-1150.75Ribosome-recycling factor OS=Leptothrix cholodnii ... [more]
RRF_HELPY7.517e-1147.83Ribosome-recycling factor OS=Helicobacter pylori G... [more]
RRF_HELPH7.517e-1147.83Ribosome-recycling factor OS=Helicobacter pylori (... [more]
RRF_HELP27.517e-1147.83Ribosome-recycling factor OS=Helicobacter pylori (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184793 ID=CN184793; Name=CN184793; organism=Citrus sinensis; type=EST; length=385bp
ATTTCCACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAG
TATCAAAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTC
TGAGATTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTA
AACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCT
TCATATACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACA
TTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAA
CGCATCTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTT
TGGCCACAACCTTTGACAGTTCCTTCCTCCTTTCG
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