CN184793

Overview
NameCN184793
Unique NameCN184793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_HELAH (Ribosome-recycling factor OS=Helicobacter acinonychis (strain Sheeba) GN=frr PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            E+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:  108 EQRKLIAKDAKAMGEKAKVAVRNIRQDANNKVKKLEKDKEISEDESKKAQEQVQKITDEAIKKIDESVK 176          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_CORJK (Ribosome-recycling factor OS=Corynebacterium jeikeium (strain K411) GN=frr PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKE+ KV   + E+ K+A+RNIRR  ++   K+QK+ +  ED V+    DL+K+T  Y++++DS+
Sbjct:  108 ERRKEMVKVAKSKGEDAKIAIRNIRRKGMEQLGKIQKDGEAGEDEVRAAEKDLEKITHSYVEQVDSL 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_CAMLR (Ribosome-recycling factor OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=frr PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = -2
Query:  178 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 384
            E+R+E +K      E+ KVA+RNIR+DA  A +KL+K+K +SED  K    ++QK TD Y  KID + K
Sbjct:  108 EQREENAKSAKAMGEKAKVAIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKQTDNYTTKIDELVK 176          
The following BLAST results are available for this feature:
BLAST of CN184793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RRF_HELAH9.817e-1147.83Ribosome-recycling factor OS=Helicobacter acinonyc... [more]
RRF_CORJK9.817e-1141.79Ribosome-recycling factor OS=Corynebacterium jeike... [more]
RRF_CAMLR9.817e-1146.38Ribosome-recycling factor OS=Campylobacter lari (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184793 ID=CN184793; Name=CN184793; organism=Citrus sinensis; type=EST; length=385bp
ATTTCCACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAG
TATCAAAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTC
TGAGATTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTA
AACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCT
TCATATACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACA
TTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAA
CGCATCTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTT
TGGCCACAACCTTTGACAGTTCCTTCCTCCTTTCG
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