CN184793

Overview
NameCN184793
Unique NameCN184793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_STRT2 (Ribosome-recycling factor OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=frr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L  D+QK TD+ + KIDS+
Sbjct:  108 ETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSM 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_STRT1 (Ribosome-recycling factor OS=Streptococcus thermophilus (strain CNRZ 1066) GN=frr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L  D+QK TD+ + KIDS+
Sbjct:  108 ETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSM 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SHESA (Ribosome-recycling factor OS=Shewanella sp. (strain ANA-3) GN=frr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRK+  KVV  +AE G+VA+RN+RRDA+   +KL+K K+ +ED+V+    ++QK TD ++KK+D I
Sbjct:  108 ERRKDFIKVVRAEAEGGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEI 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SHEPW (Ribosome-recycling factor OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=frr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRK+L KVV  +AE G++AVRN+RRDA    + L+KEK+ +ED+V+    ++QK TD ++KKID I
Sbjct:  108 ERRKDLIKVVRAEAENGRIAVRNVRRDANSDVKALEKEKECTEDDVRRTEDEVQKFTDAHIKKIDEI 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_NOSP7 (Ribosome-recycling factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=frr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            +RRKE  K+  K AEEG+VA+RNIRRDA+ +  K +K  ++S+D  KD   +LQKLT+EY  +ID++
Sbjct:  105 DRRKEFVKMATKYAEEGRVAIRNIRRDAIDSIRKQEKASEISKDESKDQQDNLQKLTNEYTSRIDAL 171          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_BURPP (Ribosome-recycling factor OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=frr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 35/67 (52.24%), Postives = 52/67 (77.61%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERR+EL+KVV  +AE  KVAVRN+RRDA +  +KL K+K++SED+ +    D+QKLTD+++ +ID +
Sbjct:  109 ERRRELTKVVKSEAETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKL 175          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_ALKMQ (Ribosome-recycling factor OS=Alkaliphilus metalliredigens (strain QYMF) GN=frr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 33/67 (49.25%), Postives = 54/67 (80.60%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRKEL+KVV + AEEG+VA+RN RRDA +  +K++K+ +L+ED++K    ++QK+TD++ K++D +
Sbjct:  108 ERRKELTKVVKRVAEEGRVALRNGRRDANEQLKKMEKDSELTEDDLKQAQEEVQKITDKFNKQVDEM 174          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_THET8 (Ribosome-recycling factor OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=frr PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRK+L + V + AEEG+VA+RNIRR+AL   +KL KE  LSED  K   +++QK+TDE++ K D +
Sbjct:  109 ERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQL 175          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_THET2 (Ribosome-recycling factor OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=frr PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            ERRK+L + V + AEEG+VA+RNIRR+AL   +KL KE  LSED  K   +++QK+TDE++ K D +
Sbjct:  109 ERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQL 175          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_SYNFM (Ribosome-recycling factor OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=frr PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  181 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 384
            +RR+EL KVV K +EE KVAVRNIRRD  +  + L+KEK++SED       + Q++TD+++KKID +Y
Sbjct:  108 DRRRELVKVVKKMSEESKVAVRNIRRDVNEMIKDLKKEKEISEDEQFKAQEETQRITDDFIKKIDVVY 175          
The following BLAST results are available for this feature:
BLAST of CN184793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RRF_STRT22.760e-1352.24Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_STRT12.760e-1352.24Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_SHESA2.760e-1349.25Ribosome-recycling factor OS=Shewanella sp. (strai... [more]
RRF_SHEPW2.760e-1352.24Ribosome-recycling factor OS=Shewanella piezotoler... [more]
RRF_NOSP72.760e-1350.75Ribosome-recycling factor OS=Nostoc punctiforme (s... [more]
RRF_BURPP2.760e-1352.24Ribosome-recycling factor OS=Burkholderia phytofir... [more]
RRF_ALKMQ2.760e-1349.25Ribosome-recycling factor OS=Alkaliphilus metallir... [more]
RRF_THET83.605e-1352.24Ribosome-recycling factor OS=Thermus thermophilus ... [more]
RRF_THET23.605e-1352.24Ribosome-recycling factor OS=Thermus thermophilus ... [more]
RRF_SYNFM3.605e-1351.47Ribosome-recycling factor OS=Syntrophobacter fumar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184793 ID=CN184793; Name=CN184793; organism=Citrus sinensis; type=EST; length=385bp
ATTTCCACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAG
TATCAAAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTC
TGAGATTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTA
AACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCT
TCATATACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACA
TTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAA
CGCATCTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTT
TGGCCACAACCTTTGACAGTTCCTTCCTCCTTTCG
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