CN184793

Overview
NameCN184793
Unique NameCN184793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_YERPY (Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:  108 ERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_YERPS (Ribosome-recycling factor OS=Yersinia pseudotuberculosis GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:  108 ERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_YERPP (Ribosome-recycling factor OS=Yersinia pestis (strain Pestoides F) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:  108 ERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_YERPN (Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:  108 ERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_YERPG (Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Angola) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:  108 ERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_YERPE (Ribosome-recycling factor OS=Yersinia pestis GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:  108 ERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_YERPB (Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:  108 ERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_YERPA (Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:  108 ERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_YERP3 (Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  187 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 384
            ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:  108 ERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CN184793 vs. ExPASy Swiss-Prot
Match: RRF_STRMU (Ribosome-recycling factor OS=Streptococcus mutans GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  184 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 384
            E RKEL+K V K  E  KVA+RNIRRDA+   +K +K K+++ED +K L  D+QK+TDE +K IDS+
Sbjct:  108 ETRKELAKEVKKVGENAKVAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSM 174          
The following BLAST results are available for this feature:
BLAST of CN184793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RRF_YERPY4.708e-1351.52Ribosome-recycling factor OS=Yersinia pseudotuberc... [more]
RRF_YERPS4.708e-1351.52Ribosome-recycling factor OS=Yersinia pseudotuberc... [more]
RRF_YERPP4.708e-1351.52Ribosome-recycling factor OS=Yersinia pestis (stra... [more]
RRF_YERPN4.708e-1351.52Ribosome-recycling factor OS=Yersinia pestis bv. A... [more]
RRF_YERPG4.708e-1351.52Ribosome-recycling factor OS=Yersinia pestis bv. A... [more]
RRF_YERPE4.708e-1351.52Ribosome-recycling factor OS=Yersinia pestis GN=fr... [more]
RRF_YERPB4.708e-1351.52Ribosome-recycling factor OS=Yersinia pseudotuberc... [more]
RRF_YERPA4.708e-1351.52Ribosome-recycling factor OS=Yersinia pestis bv. A... [more]
RRF_YERP34.708e-1351.52Ribosome-recycling factor OS=Yersinia pseudotuberc... [more]
RRF_STRMU4.708e-1353.73Ribosome-recycling factor OS=Streptococcus mutans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184793 ID=CN184793; Name=CN184793; organism=Citrus sinensis; type=EST; length=385bp
ATTTCCACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAG
TATCAAAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTC
TGAGATTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTA
AACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCT
TCATATACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACA
TTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAA
CGCATCTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTT
TGGCCACAACCTTTGACAGTTCCTTCCTCCTTTCG
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