CN184790

Overview
NameCN184790
Unique NameCN184790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6025 contig Csv1_Contig6025:1068..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: XYLL2_ARATH (D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 55/169 (32.54%), Postives = 89/169 (52.66%), Query Frame = -1
Query:    8 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 514
            +V+ Y+P I + AG +++      ++ +G +K I   VA  ++D++GRRPLLL  V GM+ SL  L         S         +A+  +L YV  + +  GPI W+  SEI PLKLR +G S+ V+VN   + +V+  F  L + +  G  F  +  I  ++ VF +
Sbjct:  323 SVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSYYLFFSASPV-------VAVVALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICVLSLVFIF 484          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: XYLL1_ARATH (D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 55/169 (32.54%), Postives = 92/169 (54.44%), Query Frame = -1
Query:    8 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 514
            +V+ Y+P I + AG +++      ++ +G +K +   V+  ++D++GRRPLLL  V+GM+ SL  L            K + A+  A++ +L YV  + +  GPI W+  SEI PLKLR +G S+ V+VN   + +V+  F  L + +  G  F  +  I  V+  F Y
Sbjct:  323 SVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLLCGVSGMVISLFLLGSYYMFY-----KNVPAV--AVAALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFIY 484          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.682e-18
Identity = 53/166 (31.93%), Postives = 90/166 (54.22%), Query Frame = -1
Query:   14 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 511
            V+ YSP I + AG  S+   L  ++ V  +     +V  + +D  GR+ L LSS+ G+I SL  L++S     ++         LA+  +  Y+ FF+ GMGP+ W  +SEI P + R     +   VN +++ +V+ TFL++++A   G +F + A IA +A +F
Sbjct:  294 VMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIF 459          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: ARAE_KLEOX (Arabinose-proton symporter OS=Klebsiella oxytoca GN=araE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.747e-18
Identity = 50/167 (29.94%), Postives = 90/167 (53.89%), Query Frame = -1
Query:   17 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQ--SHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWV 511
            ++ Y+PRIF+ AG  +++++++AT+ VG        +A F +DK GR+P L    + M      L   L   D   +   + W   L++   +  +A +++   P+ W+  SEI PLK R  G +     N V++ ++  TFL+L  AI   G+F+LY ++ +VA++
Sbjct:  277 IMYYAPRIFKMAGFTTTEQQMVATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMAIGTLVLGYCLMQFDNGTASSGLSW---LSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDAIGAAGTFWLYTAL-NVAFI 439          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: ARAE_ECOLI (Arabinose-proton symporter OS=Escherichia coli (strain K12) GN=araE PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 49/167 (29.34%), Postives = 90/167 (53.89%), Query Frame = -1
Query:   17 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQ--SHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWV 511
            ++ Y+PRIF+ AG  +++++++AT+ VG        +A F +DK GR+P L    + M      L   L   D   +   + W   L++   +  +A +++   P+ W+  SEI PLK R  G +     N V++ ++  TFL+L  +I   G+F+LY ++ ++A+V
Sbjct:  277 IMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSW---LSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTAL-NIAFV 439          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: ARAE_ECO57 (Arabinose-proton symporter OS=Escherichia coli O157:H7 GN=araE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 49/167 (29.34%), Postives = 90/167 (53.89%), Query Frame = -1
Query:   17 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQ--SHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWV 511
            ++ Y+PRIF+ AG  +++++++AT+ VG        +A F +DK GR+P L    + M      L   L   D   +   + W   L++   +  +A +++   P+ W+  SEI PLK R  G +     N V++ ++  TFL+L  +I   G+F+LY ++ ++A+V
Sbjct:  277 IMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSW---LSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTAL-NIAFV 439          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: ERDL8_ARATH (Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.348e-18
Identity = 57/167 (34.13%), Postives = 95/167 (56.89%), Query Frame = -1
Query:   14 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAI-GLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 511
            V+ Y+ +IF  AG + +   +L ++       +  L AT L+D++GRRPLL++S  GM+  +  L I  + + ++H   +  I  LA+S VL Y+  FSIGMG I WV  SEI P+ L+     +  +VN ++S +VS TF +     +  G+F++Y  +  +A +F
Sbjct:  289 VIFYAQQIFVSAGASPTLGSILYSIEQ---VVLTALGATLLIDRLGRRPLLMASAVGML--IGCLLIGNSFLLKAHGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTF-NFLMIWSPHGTFYVYGGVCVLAIIF 449          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: XYLL3_ARATH (D-xylose-proton symporter-like 3 OS=Arabidopsis thaliana GN=At5g59250 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.090e-17
Identity = 51/167 (30.54%), Postives = 90/167 (53.89%), Query Frame = -1
Query:   14 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 514
            +V+ Y+  I + AG +++      +V +G  K +   VA   +D +GRRPLL+  V+G       +A+SL ++   +K +     +A+  +L YV  + I  GPI+W+  SEI PL+ R +G S+ V+ N  ++ +V+  F  L + +     F L+  IA V+ +F
Sbjct:  377 SVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGGVSG-------IALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLF 536          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR1_CHICK (Solute carrier family 2, facilitated glucose transporter member 1 OS=Gallus gallus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.172e-17
Identity = 55/171 (32.16%), Postives = 93/171 (54.39%), Query Frame = -1
Query:    8 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGS--FFLYASIASVAWVFFY 514
            AV  YS  IFEK+G+   ++ + AT+  G V T F +V+ F++++ GRR L L  +AGM      + I+LT++DQ    M W   L+I  +  +VAFF IG GPI W   +E+     R    ++  + N  ++ +V M F  +++   + GS  F ++  +  + ++F Y
Sbjct:  288 AVFYYSTSIFEKSGV---EQPVYATIGSGVVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALTLLDQ----MPWMSYLSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAFAVAGLSNWTSNFIVGMGFQYIAQ---LCGSYVFIIFTVLLVLFFIFTY 448          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: MSSP2_ARATH (Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.230e-17
Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = -1
Query:    8 VVLYSPRIFEKAG---------IASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 511
            V+ Y+P+I E+AG         I+SS   LL +    FV    I VA  L+D  GRR LLL+++  +IASL  L IS  V    H   I    L+  +V+ Y  FF +G GP   +  SEI P ++R    +I  +   +   +V+ +   L K+I + G F +YA +  ++WVF +
Sbjct:  526 VLYYTPQILEQAGVGILLSNMGISSSSASLLISALTTFVMLPAIAVAMRLMDLSGRRTLLLTTIPILIASLLVLVISNLV----HMNSIVHAVLSTVSVVLYFCFFVMGFGPAPNILCSEIFPTRVRGICIAICALTFWICDIIVTYSLPVLLKSIGLAGVFGMYAIVCCISWVFVF 698          
The following BLAST results are available for this feature:
BLAST of CN184790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
XYLL2_ARATH1.165e-1932.54D-xylose-proton symporter-like 2 OS=Arabidopsis th... [more]
XYLL1_ARATH1.165e-1932.54D-xylose-proton symporter-like 1 OS=Arabidopsis th... [more]
INT1_ARATH1.682e-1831.93Probable inositol transporter 1 OS=Arabidopsis tha... [more]
ARAE_KLEOX3.747e-1829.94Arabinose-proton symporter OS=Klebsiella oxytoca G... [more]
ARAE_ECOLI6.392e-1829.34Arabinose-proton symporter OS=Escherichia coli (st... [more]
ARAE_ECO576.392e-1829.34Arabinose-proton symporter OS=Escherichia coli O15... [more]
ERDL8_ARATH8.348e-1834.13Sugar transporter ERD6-like 8 OS=Arabidopsis thali... [more]
XYLL3_ARATH1.090e-1730.54D-xylose-proton symporter-like 3 OS=Arabidopsis th... [more]
GTR1_CHICK3.172e-1732.16Solute carrier family 2, facilitated glucose trans... [more]
MSSP2_ARATH9.230e-1733.90Monosaccharide-sensing protein 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184790 ID=CN184790; Name=CN184790; organism=Citrus sinensis; type=EST; length=514bp
GACACGTGTAGAAAAACACCCACGCAACTGATGCAATTGACGCGTATAGA
AAGAAGGAGCCGCCAATCGTGATCGCTTTACTAAGCGATAGGAAAGTCAT
CGATACGACCCCACTTGTTACCCTGTTTACCATGACCCCGATACTCGCTC
CCTGAGCGCGTAGCTTCAACGGCAGAATCTCTGAACTGTAAACCCACGTG
ATGGGACCCATCCCGATTGAGAAAAACGCCACGTAGGATAAAACCGTTGA
GATGGCCAAACCAATAGCCCAGATCATCTTTTTGTGTGACTGATCTATGA
CTGTGAGAGAGATAGCAAGGGTCGCGAGCGAGGCGATCATGCCCGCAACA
CTGCTCAAAAGCAACGGACGCCGTCCGATTTTGTCGAGTAAAAACGTAGC
CACTAGGATGAAAATGGTCTTGACAAATCCAACGGCTACAGTAGCGAGCA
ACTTTTTGTCTGATGACGCAATCCCAGCTTTTTCAAAGATTCTAGGACTG
TACAGAACGACAGC
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