CN184790

Overview
NameCN184790
Unique NameCN184790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6025 contig Csv1_Contig6025:1068..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: ITR1_SCHPO (Myo-inositol transporter 1 OS=Schizosaccharomyces pombe GN=itr1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.065e-15
Identity = 56/178 (31.46%), Postives = 90/178 (50.56%), Query Frame = -1
Query:    2 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQ-------SHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 514
            +++ +S  IFE  G  +     L   A  FV   F +VA  ++D  GRR LLL +V GMIA+L   A++   + +       S +   WAI + IS ++ YVA ++ G+G + W   SE+ P+ +R  G  +   VN   +  +  +FL+L   IT  G+F LY  +  + W+    C
Sbjct:  356 SLMYFSSTIFEVVGFNNPTATGLIIAATNFV---FTIVAFGVIDFFGRRILLLLTVWGMIAALIVCAVAFHFLPKDENGNYTSGQSNAWAIVVLISMIV-YVASYASGLGNLPW-QQSELFPMSVRGLGTGMSTAVNWAGNLGIGASFLTLMSEITPTGTFALYGGLCFLGWLGALFC 528          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 6.615e-15
Identity = 47/168 (27.98%), Postives = 82/168 (48.81%), Query Frame = -1
Query:    8 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 511
            V+ Y+P IF KAG+ +S    L T+ +G +  I  + A  L+D++GR+ LL+    G+  SLA L+  L  +  S     W   + +     Y+ F+    GP+ WV   E+ P K R        +V    + +VS+ F  +  A+ I   F +++ I  +++ F +
Sbjct:  261 VIYYAPTIFTKAGLGTS-ASALGTMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLS-ASTAWMTVVFLGV---YIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAF 423          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: YNCC_BACSU (Putative metabolite transport protein yncC OS=Bacillus subtilis GN=yncC PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.639e-15
Identity = 48/169 (28.40%), Postives = 90/169 (53.25%), Query Frame = -1
Query:    8 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 514
            +++ Y  +I +++G  +    L+A +  G +  I ++   +L+ K+ RRP+LL  +AG   +L  +AI   V+D S       + L   TVL ++AF    +GP+TW+  +EI P +LR  G+ I V    + + V+   F  L  ++ +  +FF++ ++  +A  F Y
Sbjct:  274 SIMYYGTQILKESGFGTK-AALIANIGNGLISVIAVIFGIWLVGKVRRRPILLIGLAGTTTALLLIAIFSIVLDGSMALPYVVLSL---TVL-FLAFMQGCVGPVTWLVIAEIFPQRLRGLGSGISVFFLWILNFVIGFAFPILLSSVGLSFTFFIFVALGVLAIGFVY 437          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: XYLE_ECOLI (D-xylose-proton symporter OS=Escherichia coli (strain K12) GN=xylE PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.639e-15
Identity = 53/175 (30.29%), Postives = 89/175 (50.86%), Query Frame = -1
Query:    8 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGL-AISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITI------GGSFFLYASIASVAWVFFY 511
            V+ Y+P +F+  G AS+D  LL T+ VG +   F ++A   +DK GR+PL +    GM   + +L  +             A G+ A+ ++L YVA F++  GP+ WV  SEI P  +R +  +I V    + +  VS TF  + K   +      G S+++Y  +  +A +F +
Sbjct:  296 VLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: XYLE_ECO57 (D-xylose-proton symporter OS=Escherichia coli O157:H7 GN=xylE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.639e-15
Identity = 53/175 (30.29%), Postives = 89/175 (50.86%), Query Frame = -1
Query:    8 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGL-AISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITI------GGSFFLYASIASVAWVFFY 511
            V+ Y+P +F+  G AS+D  LL T+ VG +   F ++A   +DK GR+PL +    GM   + +L  +             A G+ A+ ++L YVA F++  GP+ WV  SEI P  +R +  +I V    + +  VS TF  + K   +      G S+++Y  +  +A +F +
Sbjct:  296 VLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: MSSP1_ARATH (Monosaccharide-sensing protein 1 OS=Arabidopsis thaliana GN=MSSP1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.639e-15
Identity = 56/177 (31.64%), Postives = 93/177 (52.54%), Query Frame = -1
Query:    8 VVLYSPRIFEKAGIASSDKKL-LATVAVGFV----KTIFIL----VATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 511
            V+ Y+P+I E+AG+      L L++++  F+     T+ +L    VA  L+D  GRR LLL ++  +I SL  L IS  +    H   +    L+   V+ Y  FF +G GPI  +  SEI P ++R    +I  MV  +   +V+ +   L  +I + G F +YA++  ++W+F Y
Sbjct:  529 VLYYTPQILERAGVDILLSSLGLSSISASFLISGLTTLLMLPAIVVAMRLMDVSGRRSLLLWTIPVLIVSLVVLVISELI----HISKVVNAALSTGCVVLYFCFFVMGYGPIPNILCSEIFPTRVRGLCIAICAMVFWIGDIIVTYSLPVLLSSIGLVGVFSIYAAVCVISWIFVY 701          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GLF_ZYMMO (Glucose facilitated diffusion protein OS=Zymomonas mobilis GN=glf PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.639e-15
Identity = 48/169 (28.40%), Postives = 90/169 (53.25%), Query Frame = -1
Query:   32 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIG--LAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFL------SLSKAITIGGSFFLYASIA 514
            AV+ Y+P++F+  G  + D  LL T+++G V  IF ++A+ ++D+ GR+PLL+    GM A +A L               + +G  L +++VL Y+A F +  GP+ WV  SE+ P  ++     I V    + + +V+  F       +L++    G S+ ++A+++
Sbjct:  286 AVLYYAPQMFQNLGFGA-DTALLQTISIGVVNFIFTMIASRVVDRFGRKPLLIWGALGMAAMMAVLGCCFW----------FKVGGVLPLASVLLYIAVFGMSWGPVCWVVLSEMFPSSIKGAAMPIAVTGQWLANILVNFLFKVADGSPALNQTFNHGFSYLVFAALS 443          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR3_BOVIN (Solute carrier family 2, facilitated glucose transporter member 3 OS=Bos taurus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14
Identity = 55/170 (32.35%), Postives = 84/170 (49.41%), Query Frame = -1
Query:    8 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVA-WVFFY 514
            AV  YS  IF+ AG+    + + AT+  G V TIF +V+ FL+++ GRR L L  + GM      + ISL + D       W   + I  +L +VAFF IG GPI W   +E+     R    ++    N  ++ +V + F   S A  +G   F+  ++  V  WVF +
Sbjct:  287 AVFYYSTGIFKDAGV---QEPVYATIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLLKD----NYSWMSFICIGAILVFVAFFEIGPGPIPWFIVAELFGQGPRPAAMAVAGCSNWTSNFLVGLLF--PSAAFYLGAYVFIVFTVFLVIFWVFTF 447          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR2_MOUSE (Solute carrier family 2, facilitated glucose transporter member 2 OS=Mus musculus GN=Slc2a2 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14
Identity = 48/168 (28.57%), Postives = 86/168 (51.19%), Query Frame = -1
Query:    8 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 511
            +  YS  IF+ AGI+   + + AT+ VG +  IF  V+  L++K GRR L L+ + GM      +++ L ++D    K  W   ++++ +  +V+FF IG GPI W   +E      R    ++    N V + V+++ F  ++  +     FFL+A +  V  +F +
Sbjct:  321 IFYYSTSIFQTAGIS---QPVYATIGVGAINMIFTAVSVLLVEKAGRRTLFLTGMIGMFFCTIFMSVGLVLLD----KFAWMSYVSMTAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPTALALAAFSNWVCNFVIALCFQYIADFLG-PYVFFLFAGVVLVFTLFTF 480          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: ERDL7_ARATH (Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14
Identity = 51/168 (30.36%), Postives = 87/168 (51.79%), Query Frame = -1
Query:   14 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAIS--LTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 511
            +  Y+  IFE+AG  +     L  +    ++ +   +   ++D+ GR+PLLL S  G++      A+S  L V D +H+ +     LA+  ++ Y+  FS GMG + WV  SEI P+ ++     +  +VN   +  VS TF  L    +  G+F +YA+I ++A VF
Sbjct:  282 ICFYTSSIFEQAGFPTR----LGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLKVHDMAHEAVPV---LAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSY-GTFLIYAAINALAIVF 441          
The following BLAST results are available for this feature:
BLAST of CN184790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
ITR1_SCHPO5.065e-1531.46Myo-inositol transporter 1 OS=Schizosaccharomyces ... [more]
CSBC_BACSU6.615e-1527.98Probable metabolite transport protein csbC OS=Baci... [more]
YNCC_BACSU8.639e-1528.40Putative metabolite transport protein yncC OS=Baci... [more]
XYLE_ECOLI8.639e-1530.29D-xylose-proton symporter OS=Escherichia coli (str... [more]
XYLE_ECO578.639e-1530.29D-xylose-proton symporter OS=Escherichia coli O157... [more]
MSSP1_ARATH8.639e-1531.64Monosaccharide-sensing protein 1 OS=Arabidopsis th... [more]
GLF_ZYMMO8.639e-1528.40Glucose facilitated diffusion protein OS=Zymomonas... [more]
GTR3_BOVIN1.128e-1432.35Solute carrier family 2, facilitated glucose trans... [more]
GTR2_MOUSE1.128e-1428.57Solute carrier family 2, facilitated glucose trans... [more]
ERDL7_ARATH1.128e-1430.36Sugar transporter ERD6-like 7 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184790 ID=CN184790; Name=CN184790; organism=Citrus sinensis; type=EST; length=514bp
GACACGTGTAGAAAAACACCCACGCAACTGATGCAATTGACGCGTATAGA
AAGAAGGAGCCGCCAATCGTGATCGCTTTACTAAGCGATAGGAAAGTCAT
CGATACGACCCCACTTGTTACCCTGTTTACCATGACCCCGATACTCGCTC
CCTGAGCGCGTAGCTTCAACGGCAGAATCTCTGAACTGTAAACCCACGTG
ATGGGACCCATCCCGATTGAGAAAAACGCCACGTAGGATAAAACCGTTGA
GATGGCCAAACCAATAGCCCAGATCATCTTTTTGTGTGACTGATCTATGA
CTGTGAGAGAGATAGCAAGGGTCGCGAGCGAGGCGATCATGCCCGCAACA
CTGCTCAAAAGCAACGGACGCCGTCCGATTTTGTCGAGTAAAAACGTAGC
CACTAGGATGAAAATGGTCTTGACAAATCCAACGGCTACAGTAGCGAGCA
ACTTTTTGTCTGATGACGCAATCCCAGCTTTTTCAAAGATTCTAGGACTG
TACAGAACGACAGC
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