CN184790

Overview
NameCN184790
Unique NameCN184790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6025 contig Csv1_Contig6025:1068..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR4_BOVIN (Solute carrier family 2, facilitated glucose transporter member 4 OS=Bos taurus GN=SLC2A4 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.474e-14
Identity = 50/168 (29.76%), Postives = 84/168 (50.00%), Query Frame = -1
Query:   11 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFF 514
            AV  YS  IFE AG+   +K   AT+  G V T+F LV+ FL+++ GRR L L  +AGM      + ++L ++++          ++I  +  +VAFF IG GPI W   +E+     R    ++    N   + ++ M F  ++ A  +G   FL  ++  + +  F
Sbjct:  305 AVFYYSTSIFESAGV---EKPAYATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPAMSY----VSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIIGMGFQYVADA--MGPYVFLLFAVLLLGFFIF 463          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR2_RAT (Solute carrier family 2, facilitated glucose transporter member 2 OS=Rattus norvegicus GN=Slc2a2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.474e-14
Identity = 47/168 (27.98%), Postives = 86/168 (51.19%), Query Frame = -1
Query:    8 VVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 511
            +  YS  IF+ AGI+   + + AT+ VG +  IF  V+  L++K GRR L L+ + GM      +++ L ++D    K  W   ++++ +  +V+FF IG GPI W   +E      R    ++    N V + ++++ F  ++  +     FFL+A +  V  +F +
Sbjct:  320 IFYYSTSIFQTAGIS---QPVYATIGVGAINMIFTAVSVLLVEKAGRRTLFLAGMIGMFFCAVFMSLGLVLLD----KFTWMSYVSMTAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPTALALAAFSNWVCNFIIALCFQYIADFLG-PYVFFLFAGVVLVFTLFTF 479          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR8_MOUSE (Solute carrier family 2, facilitated glucose transporter member 8 OS=Mus musculus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.514e-14
Identity = 52/186 (27.96%), Postives = 94/186 (50.54%), Query Frame = -1
Query:    5 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVI-----DQSHKKMIWAIG-----------LAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 514
            A++ Y+  IFE+A    S    LA+V VG ++ +F  VA  ++D+ GRR LL  S   M+ S++       +      + SH  ++               LA+ ++  ++A F++G GPI W+  SEI PL ++     I V+ N   + +V+  F S+ + +   G+F+L A+  +++ +F  T
Sbjct:  275 AIMFYANSIFEEAKFKDSS---LASVTVGIIQVLFTAVAALIMDRAGRRLLLALSGVIMVFSMSAFGTYFKLTQSLPSNSSHVGLVPIAAEPVDVQVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWFMAFLVTKEFSSVMEMLRPYGAFWLTAAFCALSVLFTLT 457          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR3_SHEEP (Solute carrier family 2, facilitated glucose transporter member 3 OS=Ovis aries GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.514e-14
Identity = 54/170 (31.76%), Postives = 84/170 (49.41%), Query Frame = -1
Query:    8 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVA-WVFFY 514
            AV  YS  IF+ AG+    + + AT+  G V TIF +V+ FL+++ GRR L L  + GM      + ISL + D       W   + I  +L +VAFF IG GPI W   +E+     R    ++    N  ++ +V + F S +    +G   F+  ++  V  WVF +
Sbjct:  287 AVFYYSTGIFKDAGV---QEPVYATIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLLKD----NYSWMSFICIGAILVFVAFFEIGPGPIPWFIVAELFGQGPRPAAMAVAGCSNWTSNFLVGLLFPSAT--FYLGAYVFIVFTVFLVIFWVFTF 447          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR8_RAT (Solute carrier family 2, facilitated glucose transporter member 8 OS=Rattus norvegicus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 51/187 (27.27%), Postives = 94/187 (50.27%), Query Frame = -1
Query:    5 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVI-----DQSHKKMIWAIG------------LAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 514
            A++ Y+  IFE+A    S    LA+V VG ++ +F  VA  ++D+ GR+ LL  S   M+ S++       +      + SH  ++  I             LA+ ++  ++A F++G GPI W+  SEI PL ++     + V+ N   + +V+  F S+ + +   G+F+L A+   ++ +F  T
Sbjct:  275 AIMFYANTIFEEAKFKDSS---LASVTVGIIQVLFTAVAALIMDRAGRKLLLALSGVIMVFSMSAFGTYFKLTQSGPSNSSHVGLLVPISAEPADVHLGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHIKGVATGVCVLTNWFMAFLVTKEFNSIMEILRPYGAFWLTAAFCILSVLFTLT 458          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: IOLT_BACSU (Major myo-inositol transporter iolT OS=Bacillus subtilis GN=iolT PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.600e-14
Identity = 44/167 (26.35%), Postives = 85/167 (50.90%), Query Frame = -1
Query:   14 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 514
            +++ Y   I   +G   ++  L+  +A G +  +   V  +LL ++GRRP+L++ + G   +L  + I   V++ S         + +S  ++++AF    + P+TW+  SEI PL+LR  G  + V    + +  VS TF  L  AI +  +FF++  +   + +F
Sbjct:  274 SIMYYGTEILRNSGF-QTEAALIGNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIGIFSLVLEGSPALPY----VVLSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLWMVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSVLF 435          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR3_CANFA (Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.600e-14
Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = -1
Query:   47 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFL 514
            AV  YS  IF+ AG+   ++ + AT+  G V TIF +V+ FL+++ GRR L +  + GM      + ISL + D  +    W   + I  +L +VAFF IG GPI W   +E+     R    ++    N  ++ +V + F   S A  +G   F+
Sbjct:  287 AVFYYSTGIFKDAGV---EEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSILMTISLLLKDNYN----WMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLF--PSAAFYLGAYVFI 433          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: EDL18_ARATH (Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.600e-14
Identity = 47/169 (27.81%), Postives = 89/169 (52.66%), Query Frame = -1
Query:    8 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 514
            AV+ Y+  I  KAG + +    + +  +G       ++   L+DK GRRPLLL+SV+GM  +   + ++ T+        +  +   I   L Y+  ++IG+G + WV  SEI P+ ++    SI  +V+  +S +V+  F  L +  T  G+F+++ ++  +A +F +
Sbjct:  288 AVLSYASTILRKAGFSVT----IGSTLLGLFMIPKAMIGVILVDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKMQLLPELTPVFTFICVTL-YIGTYAIGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWST-QGTFYVFGAVGGLALLFIW 450          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: STP5_ARATH (Sugar transport protein 5 OS=Arabidopsis thaliana GN=STP5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 53/170 (31.18%), Postives = 83/170 (48.82%), Query Frame = -1
Query:    5 YSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGM----IASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 502
            Y+P +F   G  S    L+AT  +GFV    +L++T ++D+ GRR L ++    M    IA    LA+++        K  +A+ + +   + Y A F    GP++W+  SEI PLK+R  G S+ V VN   +  +S TFL+        G+F  Y       W+F  T
Sbjct:  308 YAPVLFRSVGFGSGPA-LIATFILGFVNLGSLLLSTMVIDRFGRRFLFIAGGILMLLCQIAVAVLLAVTVGATGDGEMKKGYAVTVVVLLCI-YAAGFGWSWGPLSWLVPSEIFPLKIRPAGQSLSVAVNFAATFALSQTFLATLCDFKY-GAFLFYG-----GWIFTMT 469          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: PLST4_ARATH (Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.552e-14
Identity = 52/168 (30.95%), Postives = 89/168 (52.98%), Query Frame = -1
Query:   14 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIG-LAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 514
            AVV YS  +F  AGI S    + A+  VG        VA+ L+DK+GR+ LLL+S  GM  S+  L++S T      K +    G LA+   + YV  FS+G GP+  +   EI   ++RA+  ++ + ++ +++ V+ + FLS+     I   +  +A +  +A ++
Sbjct:  363 AVVYYSTSVFRSAGIQSD---VAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLLLSLSFT-----WKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLY 522          
The following BLAST results are available for this feature:
BLAST of CN184790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
GTR4_BOVIN1.474e-1429.76Solute carrier family 2, facilitated glucose trans... [more]
GTR2_RAT1.474e-1427.98Solute carrier family 2, facilitated glucose trans... [more]
GTR8_MOUSE2.514e-1427.96Solute carrier family 2, facilitated glucose trans... [more]
GTR3_SHEEP2.514e-1431.76Solute carrier family 2, facilitated glucose trans... [more]
GTR8_RAT4.288e-1427.27Solute carrier family 2, facilitated glucose trans... [more]
IOLT_BACSU5.600e-1426.35Major myo-inositol transporter iolT OS=Bacillus su... [more]
GTR3_CANFA5.600e-1432.05Solute carrier family 2, facilitated glucose trans... [more]
EDL18_ARATH5.600e-1427.81Sugar transporter ERD6-like 18 OS=Arabidopsis thal... [more]
STP5_ARATH7.314e-1431.18Sugar transport protein 5 OS=Arabidopsis thaliana ... [more]
PLST4_ARATH9.552e-1430.95Plastidic glucose transporter 4 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006B19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184790 ID=CN184790; Name=CN184790; organism=Citrus sinensis; type=EST; length=514bp
GACACGTGTAGAAAAACACCCACGCAACTGATGCAATTGACGCGTATAGA
AAGAAGGAGCCGCCAATCGTGATCGCTTTACTAAGCGATAGGAAAGTCAT
CGATACGACCCCACTTGTTACCCTGTTTACCATGACCCCGATACTCGCTC
CCTGAGCGCGTAGCTTCAACGGCAGAATCTCTGAACTGTAAACCCACGTG
ATGGGACCCATCCCGATTGAGAAAAACGCCACGTAGGATAAAACCGTTGA
GATGGCCAAACCAATAGCCCAGATCATCTTTTTGTGTGACTGATCTATGA
CTGTGAGAGAGATAGCAAGGGTCGCGAGCGAGGCGATCATGCCCGCAACA
CTGCTCAAAAGCAACGGACGCCGTCCGATTTTGTCGAGTAAAAACGTAGC
CACTAGGATGAAAATGGTCTTGACAAATCCAACGGCTACAGTAGCGAGCA
ACTTTTTGTCTGATGACGCAATCCCAGCTTTTTCAAAGATTCTAGGACTG
TACAGAACGACAGC
back to top