CN184790

Overview
NameCN184790
Unique NameCN184790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6025 contig Csv1_Contig6025:1068..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: HUP2_CHLKE (H(+)/hexose cotransporter 2 OS=Chlorella kessleri GN=HUP2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 57/175 (32.57%), Postives = 80/175 (45.71%), Query Frame = -1
Query:    2 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSS----VAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 514
            A++ Y P +F   G A     LL TV +G V      V+ F +DK GRR L L        G + + A L + L     +      A  L +  V  YVA F+   GP+ W+  SEI  L+ R  G S+ V+VN + S V+   FLS+  A+   G F  +A    +   F Y C
Sbjct:  308 AIMFYVPVLFSSFGTARH-AALLNTVIIGAVNVAATFVSIFSVDKFGRRGLFLEGGIQMFIGQVVTAAVLGVELNKYGTNLPSSTAAGVLVVICV--YVAAFAWSWGPLGWLVPSEIQTLETRGAGMSMAVIVNFLFSFVIGQAFLSMMCAMR-WGVFLFFAGWVVIMTFFVYFC 478          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR4_RAT (Solute carrier family 2, facilitated glucose transporter member 4 OS=Rattus norvegicus GN=Slc2a4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 49/168 (29.17%), Postives = 83/168 (49.40%), Query Frame = -1
Query:   11 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFF 514
            AV  YS  IFE AG+   ++   AT+  G V T+F LV+  L+++ GRR L L  +AGM      + ++L ++++          ++I  +  +VAFF IG GPI W   +E+     R    ++    N   + +V M F  ++ A  +G   FL  ++  + +  F
Sbjct:  305 AVFYYSTSIFELAGV---EQPAYATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPSMSY----VSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIVGMGFQYVADA--MGPYVFLLFAVLLLGFFIF 463          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR4_MOUSE (Solute carrier family 2, facilitated glucose transporter member 4 OS=Mus musculus GN=Slc2a4 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.779e-13
Identity = 49/168 (29.17%), Postives = 82/168 (48.81%), Query Frame = -1
Query:   11 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFF 514
            AV  YS  IFE AG+    +   AT+  G V T+F LV+  L+++ GRR L L  +AGM      + ++L ++++          ++I  +  +VAFF IG GPI W   +E+     R    ++    N   + +V M F  ++ A  +G   FL  ++  + +  F
Sbjct:  305 AVFYYSTSIFESAGVG---QPAYATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPAMSY----VSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIVGMGFQYVADA--MGPYVFLLFAVLLLGFFIF 463          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: STP8_ARATH (Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 49/156 (31.41%), Postives = 77/156 (49.36%), Query Frame = -1
Query:   50 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTV-IDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFF 514
            A++ Y+P +F+  G  + D  LL+ V  G +  +   V  FL+DK GRR LLL S   M+     + I L   +D +         + +  V  YV  F+   GP+ W+  SE  PL+ R +G ++ V  N   + V++  FLS+  A+  G  FF
Sbjct:  298 AIMFYAPVLFQTVGFGN-DAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLVIGIILAKDLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFALAVSCNMFFTFVIAQAFLSMLCAMKSGIFFF 452          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: EDL14_ARATH (Sugar transporter ERD6-like 14 OS=Arabidopsis thaliana GN=At4g04750 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 49/171 (28.65%), Postives = 87/171 (50.88%), Query Frame = -1
Query:   14 YSPRIFEKAGIASSDKKLLATVAVGFVKTIFI-----LVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIG---LAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 502
            Y+  IF   G++S          +GF+ T  +     ++   L+D  GRR LLL S AGM       AIS  +     K   W  G   +A+ +V+ Y   + +GMGPI W+ +SEI P+ ++    ++  +V  ++S +V+ +F  L +  +  G+F ++A++  + +VF
Sbjct:  295 YTDTIFTSTGVSSD---------IGFILTSIVQMTGGVLGVLLVDISGRRSLLLFSQAGMFLGCLATAISFFL----QKNNCWETGTPIMALISVMVYFGSYGLGMGPIPWIIASEIYPVDVKGAAGTVCNLVTSISSWLVTYSFNFLLQWSST-GTFMMFATVMGLGFVF 451          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR4_CANFA (Solute carrier family 2, facilitated glucose transporter member 4 (Fragment) OS=Canis familiaris GN=SLC2A4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.741e-13
Identity = 47/160 (29.38%), Postives = 81/160 (50.62%), Query Frame = -1
Query:   11 IFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFF 490
            IFE AG+    +   AT+  G V T+F LV+ FL+++ GRR L L  +AGM      + I+L ++++          ++I  +  +VAFF IG GPI W   +E+     R    ++    N  ++ ++ M F  ++ A  +G   FL  ++  +A+  F
Sbjct:    3 IFETAGVG---QPAYATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGMCGCAILMTIALLLLERLPAMSY----VSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFCNWTSNFIIGMGFQYIAXA--MGPYVFLLFAVLLLAFFIF 153          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR3_RABIT (Solute carrier family 2, facilitated glucose transporter member 3 (Fragment) OS=Oryctolagus cuniculus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.741e-13
Identity = 50/168 (29.76%), Postives = 83/168 (49.40%), Query Frame = -1
Query:   11 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFF 514
            AV  YS  IF+ AG+    + + AT+  G V TIF +V+ FL+++ GRR L L  + GM      + +SL +  +     +    + I+ +L Y AFF IG GPI W+  + +     R    ++    N  ++ +V + F   S A  +G   F+  ++  VA+  F
Sbjct:  192 AVFYYSTGIFKDAGVR---EPIYATIGAGVVNTIFTIVSVFLVERAGRRTLHLIGLGGMALCSVLMTVSLLLKXKYDTMSL----VCIAAILIYAAFFEIGPGPIPWLIVTGLFSQDPRPAAMAVAGCSNWTSNFLVGLLF--PSAAYYLGAYVFVIFAVFLVAFFIF 350          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR3_PONAB (Solute carrier family 2, facilitated glucose transporter member 3 OS=Pongo abelii GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 53/171 (30.99%), Postives = 84/171 (49.12%), Query Frame = -1
Query:   11 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYAS---IASVAWVFF 514
            AV  YS  IF+ AG+    + + AT+  G V TIF +V+ FL+++ GRR L +  + GM      + +SL + D  +      IG     +L +VAFF IG GPI W   +E+     R    ++    N  ++ +V + F   S A  +G   F+  +   I  +A+ FF
Sbjct:  287 AVFYYSTGIFKDAGV---QEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKDNYNGMSFVCIG----AILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLF--PSAAHYLGAYVFIIFTGFLITFLAFTFF 448          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: GTR3_HUMAN (Solute carrier family 2, facilitated glucose transporter member 3 OS=Homo sapiens GN=SLC2A3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 53/171 (30.99%), Postives = 84/171 (49.12%), Query Frame = -1
Query:   11 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYAS---IASVAWVFF 514
            AV  YS  IF+ AG+    + + AT+  G V TIF +V+ FL+++ GRR L +  + GM      + +SL + D  +      IG     +L +VAFF IG GPI W   +E+     R    ++    N  ++ +V + F   S A  +G   F+  +   I  +A+ FF
Sbjct:  287 AVFYYSTGIFKDAGV---QEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKDNYNGMSFVCIG----AILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLF--PSAAHYLGAYVFIIFTGFLITFLAFTFF 448          
BLAST of CN184790 vs. ExPASy Swiss-Prot
Match: ERDL1_ARATH (Sugar transporter ERD6-like 1 OS=Arabidopsis thaliana GN=SUGTL4 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 46/171 (26.90%), Postives = 89/171 (52.05%), Query Frame = -1
Query:    5 AVVLYSPRIFEKAGIASSDKKLLATVAVGFVKTIFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKMI-WAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 514
            A+  Y+ RIF+ AG  S     + T  +  +     ++  F +D+ GRRPLL+SS  G+   + +  I L+   Q+H     +   + I  ++ YV  F IG+G + WV  SE+ P+ ++    S+  + N   S ++  +F +     +  G++F++A ++ +++VF +T
Sbjct:  280 AISAYAARIFDTAGFPSD----IGTSILAVILVPQSIIVMFAVDRCGRRPLLMSSSIGLC--ICSFLIGLSYYLQNHGDFQEFCSPILIVGLVGYVLSFGIGLGGLPWVIMSEVFPVNVKITAGSLVTVSNWFFSWIIIFSF-NFMMQWSAFGTYFIFAGVSLMSFVFVWT 443          
The following BLAST results are available for this feature:
BLAST of CN184790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
HUP2_CHLKE2.128e-1332.57H(+)/hexose cotransporter 2 OS=Chlorella kessleri ... [more]
GTR4_RAT2.128e-1329.17Solute carrier family 2, facilitated glucose trans... [more]
GTR4_MOUSE2.779e-1329.17Solute carrier family 2, facilitated glucose trans... [more]
STP8_ARATH3.630e-1331.41Sugar transport protein 8 OS=Arabidopsis thaliana ... [more]
EDL14_ARATH3.630e-1328.65Sugar transporter ERD6-like 14 OS=Arabidopsis thal... [more]
GTR4_CANFA4.741e-1329.38Solute carrier family 2, facilitated glucose trans... [more]
GTR3_RABIT4.741e-1329.76Solute carrier family 2, facilitated glucose trans... [more]
GTR3_PONAB8.086e-1330.99Solute carrier family 2, facilitated glucose trans... [more]
GTR3_HUMAN8.086e-1330.99Solute carrier family 2, facilitated glucose trans... [more]
ERDL1_ARATH8.086e-1326.90Sugar transporter ERD6-like 1 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184790 ID=CN184790; Name=CN184790; organism=Citrus sinensis; type=EST; length=514bp
GACACGTGTAGAAAAACACCCACGCAACTGATGCAATTGACGCGTATAGA
AAGAAGGAGCCGCCAATCGTGATCGCTTTACTAAGCGATAGGAAAGTCAT
CGATACGACCCCACTTGTTACCCTGTTTACCATGACCCCGATACTCGCTC
CCTGAGCGCGTAGCTTCAACGGCAGAATCTCTGAACTGTAAACCCACGTG
ATGGGACCCATCCCGATTGAGAAAAACGCCACGTAGGATAAAACCGTTGA
GATGGCCAAACCAATAGCCCAGATCATCTTTTTGTGTGACTGATCTATGA
CTGTGAGAGAGATAGCAAGGGTCGCGAGCGAGGCGATCATGCCCGCAACA
CTGCTCAAAAGCAACGGACGCCGTCCGATTTTGTCGAGTAAAAACGTAGC
CACTAGGATGAAAATGGTCTTGACAAATCCAACGGCTACAGTAGCGAGCA
ACTTTTTGTCTGATGACGCAATCCCAGCTTTTTCAAAGATTCTAGGACTG
TACAGAACGACAGC
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