CN184783

Overview
NameCN184783
Unique NameCN184783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:28..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata GN=RPS22 PE=3 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 9.610e-55
Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQ+HGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQRHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS15A_STRPU (40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.255e-54
Identity = 101/130 (77.69%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            MVR++VL DAL+S+ NAEKR KRQV+IRP SKV +KFL+VM KHGYIGEFE VDDHR GKI+V LNGRLNKCGVISPRFDV + E+E WT+ LLPSRQFGY+VLTTS GIMDHEEARRK+VGGK+LGFF+
Sbjct:    1 MVRMNVLADALRSICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYIGEFEIVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS22_CANAL (40S ribosomal protein S22 OS=Candida albicans GN=RPS22A PE=3 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.639e-54
Identity = 101/130 (77.69%), Postives = 115/130 (88.46%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVI PRF+V + +IE WT  LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLTVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVIQPRFNVKINDIERWTDNLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS15A_RAT (40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.141e-54
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS15A_MOUSE (40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.141e-54
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS15A_HUMAN (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.141e-54
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS15A_DROYA (40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.141e-54
Identity = 102/130 (78.46%), Postives = 115/130 (88.46%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            MVR++VL DALK + NAEKRGKRQV++RP SKVIIKFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS15A_DROME (40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.141e-54
Identity = 102/130 (78.46%), Postives = 115/130 (88.46%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            MVR++VL DALK + NAEKRGKRQV++RP SKVIIKFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS15A_BOVIN (40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.141e-54
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS22_ASHGO (40S ribosomal protein S22 OS=Ashbya gossypii GN=RPS22A PE=3 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.652e-54
Identity = 100/130 (76.92%), Postives = 115/130 (88.46%), Query Frame = -1 
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+L GRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+V GK+LGF Y
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLTGRLNKCGVISPRFNVKINDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVAGKILGFVY 130
The following BLAST results are available for this feature:
BLAST of CN184783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS22_CANGA9.610e-5578.4640S ribosomal protein S22 OS=Candida glabrata GN=R... [more]
RS15A_STRPU1.255e-5477.6940S ribosomal protein S15a OS=Strongylocentrotus p... [more]
RS22_CANAL1.639e-5477.6940S ribosomal protein S22 OS=Candida albicans GN=R... [more]
RS15A_RAT2.141e-5478.4640S ribosomal protein S15a OS=Rattus norvegicus GN... [more]
RS15A_MOUSE2.141e-5478.4640S ribosomal protein S15a OS=Mus musculus GN=Rps1... [more]
RS15A_HUMAN2.141e-5478.4640S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
RS15A_DROYA2.141e-5478.4640S ribosomal protein S15a OS=Drosophila yakuba GN... [more]
RS15A_DROME2.141e-5478.4640S ribosomal protein S15Aa OS=Drosophila melanoga... [more]
RS15A_BOVIN2.141e-5478.4640S ribosomal protein S15a OS=Bos taurus GN=RPS15A... [more]
RS22_ASHGO3.652e-5476.9240S ribosomal protein S22 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184783 ID=CN184783; Name=CN184783; organism=Citrus sinensis; type=EST; length=704bp
GAGGTACTTATATTCCTCACTTACACAATCAGATGTTAACAGAACTTGGG
AAAATTGATCACCAAATCAACTGCTAAGAGATAAATGTGTGTAACACATA
ATATCATCTTTCTTCAACTAAAAAGTACCAATCCGAGTTTAAAAATGCAT
AATTAAATCAAGTAAAACAAAGAGAAGCTAATCCATTTGTGAACAAGTTC
TTCCAAAGTACACAAAAAAAACTCAAGTCCCATTCTCAATATGAACTTTG
CCTAGTAGAAAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCC
TCTTCGTGGTCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAA
CTGTCTTGAGGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGC
CAACATCAAAACGGGGACTGATAACCCCACATTTGTTCAATCTTCCATTC
AGTTCAACCACAATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTC
ACCAATGTACCCGTGCTTTTGCATCACCAGAAGAAACTTAATGATAACCT
TGGAGGATGGTCTGATCATAACCTGACGCTTCCCCCTTTTCTCGGCATTA
TACATGCTCTTAAGAGCATCATTCAGAACACTAACTCTCACCATTGTTGC
TGCGTAGGCAAATCAAAGCAGGGAGAGGCGCCTCTGAAAGAGTACGTGAG
CTGC
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