CN184783

Overview
NameCN184783
Unique NameCN184783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:28..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_DESK1 (30S ribosomal protein S8P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.231e-27
Identity = 60/133 (45.11%), Postives = 89/133 (66.92%), Query Frame = -1
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEI---EGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            MV +  L +AL ++YNAE R K++V++ P+SK+ +  L V+Q+ GYIGEFEY+DD R GKI ++L GR+NK GVI PR+ V  +E+     W  R LP+   G I+++T  G++ H+EA  K  GG +L + Y
Sbjct:    1 MVVMDTLANALSAIYNAEIRAKKEVVVWPASKLTLNVLKVLQREGYIGEFEYIDDGRWGKIKIQLLGRINKIGVIKPRYPVKHRELAEFPEWLKRYLPAYNIGVIIVSTPYGVLSHKEAVEKQTGGVLLAYCY 133          
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_PYRAE (30S ribosomal protein S8P OS=Pyrobaculum aerophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 55/130 (42.31%), Postives = 88/130 (67.69%), Query Frame = -1
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            MV + +L++AL  + NAE  GK+Q +I P +K+    L V+Q++GY+GE EY+DD + GK +V+L G++N  G I PR+ V  +EI  W  + LP+RQ G ++++TS G+M H EA+ + +GG +L + Y
Sbjct:    1 MVMLDILSNALIQIKNAEIVGKKQAVIWPVNKLTYYTLRVLQRYGYVGEIEYIDDGKGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILIISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = -1
Query:  255 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 626
            L DAL ++ N E + K   +I P+SK+I + L  MQK  YIG FEY+DD+RAG+  VEL G +NKCGVI PR  V   E E +  R LP++ FG +++TT  GIM H EA+ + +GG++L + Y
Sbjct:    7 LADALTNIRNNELQVKDSCVISPASKLIGEVLSTMQKENYIGNFEYIDDNRAGQFKVELEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRLLAYMY 130          
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27
Identity = 56/124 (45.16%), Postives = 83/124 (66.94%), Query Frame = -1
Query:  255 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 626
            LND + S+ NA + GKR+++  P++K+I K L VMQ + YI  FE +D+ R GK  + LN  +N CGVI PRF V  + +E + AR LP+  FG ++LTT+ G+M + EAR+  +GGK+L + Y
Sbjct:    6 LNDVINSIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 55/129 (42.64%), Postives = 85/129 (65.89%), Query Frame = -1
Query:  255 VRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 641
            +R   LND + S+ NA + G+R+++  P++K+I K L VMQ + YI  FE +D+ R GK  + LN  +N CGVI PRF V  + +E + +R LP+  FG ++LTT+ G+M + EAR+  +GGK+L + Y
Sbjct:    1 MRNDTLNDVINSIKNASRLGRREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 55/127 (43.31%), Postives = 88/127 (69.29%), Query Frame = -1
Query:  255 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 635
            V  L++A+ ++ NAE  G+++  I+P+SK+I   L VM+ +GYI  FEYV++HR GK +VEL+G +N CG I PRF   V E E +  R LP+R FG ++++T+ G+M  ++AR++ +GG +L + Y
Sbjct:    3 VDTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGGVLLAYVY 129          
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_HALLT (30S ribosomal protein S8P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.446e-26
Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = -1
Query:  255 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 620
            +AL  M NAE  G     + P+S +I   L V+   GY+  FEYVDD +AGK  VEL G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR + +GG+V+ + Y
Sbjct:    9 NALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQVIAYVY 130          
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_PICTO (30S ribosomal protein S8P OS=Picrophilus torridus GN=rps8p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = -1
Query:  255 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 626
            LND + ++ NA + GK +V+I P+S +I + L VMQ + YI  FE +++ R GK  VEL+  +N CGVI PR  V    IE + +R LP++ FG I+LTT+ GIM H EAR+  +GGK+L + Y
Sbjct:    6 LNDVINTIKNASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELSDTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLLAYVY 129          
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_NITMS (30S ribosomal protein S8P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = -1
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            M   ++L +   ++YN E R K +  I P+SK+ I+ L  +QK GYIGEFE++DD R GK  ++L  ++ KCG ISPRF V   E   W  + LP+   G +++TT+ G+M H EA +K +GG ++G+ Y
Sbjct:    1 MPATNILANLFVTLYNNETRRKGECTILPTSKLGIEVLKTLQKDGYIGEFEHIDDKRGGKFKIKLLAKITKCGAISPRFKVKTDEFNNWEQQYLPAYDRGMLLVTTNQGVMSHHEATQKGIGGFLIGYVY 130          
BLAST of CN184783 vs. ExPASy Swiss-Prot
Match: RS8_METHJ (30S ribosomal protein S8P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps8p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 50/130 (38.46%), Postives = 88/130 (67.69%), Query Frame = -1
Query:  255 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 644
            M R++ + DA+ ++ NA   G+ + +++P+ ++I + L +M++ GYI E+  ++D R G+  V ++G +NKCG ISPR+ V + E+E W    LPS+  G ++++TS G+M H +ARR  VGG++LG+ Y
Sbjct:    1 MARLNTVADAMSTLKNASDTGRAECIVQPAGRLIGELLRIMKEAGYIKEYTRIEDGRGGQFKVVMSGLINKCGCISPRYSVSLDEMEYWEQLYLPSKNIGMLMISTSKGVMGHHDARRNGVGGELLGYVY 130          
The following BLAST results are available for this feature:
BLAST of CN184783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_DESK12.231e-2745.1130S ribosomal protein S8P OS=Desulfurococcus kamch... [more]
RS8_PYRAE3.805e-2742.3130S ribosomal protein S8P OS=Pyrobaculum aerophilu... [more]
RS8_METS33.805e-2747.5830S ribosomal protein S8P OS=Methanobrevibacter sm... [more]
RS8_THEAC4.970e-2745.1630S ribosomal protein S8P OS=Thermoplasma acidophi... [more]
RS8_THEVO1.107e-2642.6430S ribosomal protein S8P OS=Thermoplasma volcaniu... [more]
RS8_ARCFU1.107e-2643.3130S ribosomal protein S8P OS=Archaeoglobus fulgidu... [more]
RS8_HALLT1.446e-2644.2630S ribosomal protein S8P OS=Halorubrum lacusprofu... [more]
RS8_PICTO4.207e-2645.9730S ribosomal protein S8P OS=Picrophilus torridus ... [more]
RS8_NITMS7.177e-2641.5430S ribosomal protein S8P OS=Nitrosopumilus mariti... [more]
RS8_METHJ7.177e-2638.4630S ribosomal protein S8P OS=Methanospirillum hung... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006B14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184783 ID=CN184783; Name=CN184783; organism=Citrus sinensis; type=EST; length=704bp
GAGGTACTTATATTCCTCACTTACACAATCAGATGTTAACAGAACTTGGG
AAAATTGATCACCAAATCAACTGCTAAGAGATAAATGTGTGTAACACATA
ATATCATCTTTCTTCAACTAAAAAGTACCAATCCGAGTTTAAAAATGCAT
AATTAAATCAAGTAAAACAAAGAGAAGCTAATCCATTTGTGAACAAGTTC
TTCCAAAGTACACAAAAAAAACTCAAGTCCCATTCTCAATATGAACTTTG
CCTAGTAGAAAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCC
TCTTCGTGGTCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAA
CTGTCTTGAGGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGC
CAACATCAAAACGGGGACTGATAACCCCACATTTGTTCAATCTTCCATTC
AGTTCAACCACAATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTC
ACCAATGTACCCGTGCTTTTGCATCACCAGAAGAAACTTAATGATAACCT
TGGAGGATGGTCTGATCATAACCTGACGCTTCCCCCTTTTCTCGGCATTA
TACATGCTCTTAAGAGCATCATTCAGAACACTAACTCTCACCATTGTTGC
TGCGTAGGCAAATCAAAGCAGGGAGAGGCGCCTCTGAAAGAGTACGTGAG
CTGC
back to top