CN184780

Overview
NameCN184780
Unique NameCN184780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184780_ssr41 microsatellite CN184780_ssr41:41..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 9.753e-26
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIPITGTG  P++   GAAVIYNK K WDD W+FWVGPFIGAAIAA YHQF+LRA   K+LG
Sbjct:  205 PIGFAVFMVHLATIPITGTGINPARSF-GAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 277          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.753e-26
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIPITGTG  P++   GAAVIYNK K WDD W+FWVGPFIGAAIAA YHQF+LRA   K+LG
Sbjct:  207 PIGFAVFMVHLATIPITGTGINPARSF-GAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 279          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIPITGTG  P++ + GAAVIYN+ KAWDD W+FW GPFIGA  AA YHQ+ILRA A+KALG
Sbjct:  202 PIGFAVFMVHLATIPITGTGINPARSI-GAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALG 274          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = -3
Query:  373 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVK 585
            P+ FAVFMVHLATIPITGTG  P++ + GAAVIYN DKAWDD W+FWVGPFIGAAIAA YHQ++LRA A K
Sbjct:  207 PIGFAVFMVHLATIPITGTGINPARSL-GAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRASAAK 276          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = -3
Query:  373 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVK 585
            P+ FAVFMVHLATIPITGTG  P++ + G AVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  211 PIGFAVFMVHLATIPITGTGINPARSL-GTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK 280          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = -3
Query:  367 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKAL 585
            P+ FAVFMVHLATIPITGTG  P++   GAAVIYN +KAWDD W+FWVGPF+GA  AA YHQ+ILRA A+KAL
Sbjct:  198 PIGFAVFMVHLATIPITGTGINPARSF-GAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL 269          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIPITGTG  P++   GAAVIYNK + WDD W+FWVGPF+GA  AA YHQ++LRA A+KALG
Sbjct:  202 PIGFAVFMVHLATIPITGTGINPARSF-GAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALG 274          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.256e-25
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIPITGTG  P++   GAAVI+NK K WDD W+FWVGPFIGA IAA YHQF+LRA   K+LG
Sbjct:  205 PIGFAVFMVHLATIPITGTGINPARSF-GAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLG 277          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  379 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGA 585
            P+ FAVFMVHLATIPITGTG  P++ + GAAV+YN  KAW DQW+FWVGPFIGAAIAALYHQ +LRA A
Sbjct:  211 PIGFAVFMVHLATIPITGTGINPARSL-GAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 278          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  379 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGA 585
            P+ FAVFMVHLATIP+TGTG  P++ + GAAV+YN  KAW DQW+FWVGPFIGAAIAALYHQ +LRA A
Sbjct:  206 PIGFAVFMVHLATIPVTGTGINPARSL-GAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 273          
The following BLAST results are available for this feature:
BLAST of CN184780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP22_ARATH9.753e-2674.32Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ARATH9.753e-2674.32Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP26_ORYSJ1.274e-2572.97Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP25_MAIZE1.274e-2576.06Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP22_ORYSJ1.274e-2576.06Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP28_ARATH4.840e-2572.60Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP1_ATRCA4.840e-2570.27Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP23_ARATH8.256e-2571.62Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP26_MAIZE2.402e-2475.36Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ3.137e-2473.91Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184780 ID=CN184780; Name=CN184780; organism=Citrus sinensis; type=EST; length=626bp
CCGAGGGCTAATAATTTTTTTTTTTTCCTTAAAGCACAACAATAATAATA
ATAATCCCATACGGTGAAAATAATACAAAGTAGAAAGAGACTGAACATTG
AAGAAGTGAATTCTAAGGAAAGTGCTTGAAAACAACAGAGGGGATTACAA
AAAAGCAAGCCCCCTCATTGCCTAAGAAACTTTTTGCCTACAACTCCGTG
AAAGCACAAATCACACCCCCCCTCATTATTCACTTTTTGAAACTTAACAC
ACCTCTACTCCTTCCCAGTTTTTTCTTTCCCATTTTAAATCATTAACCCC
ATGAAGATGTGGATAATCCACTTGTCGAAACTAAAATCAAACACGGGATT
GGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAAGATGAAT
TGGTGGTACAAAGCCGCAATTGCTGCACCGATGAAGGGTCCAACCCAGAA
GAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACAGCGGCCC
CCGAGACTCCTTTGCTGGGTTAATGCCCAGTGCCAGTGATTGGGATTGTG
GCCAAGTGTACCATGAACACAGCAAAATCCAATGGGGGAGCGGTGCCAAA
ACGGGGACATGGGAGTCTCTGGCGCT
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