CN184780

Overview
NameCN184780
Unique NameCN184780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184780_ssr41 microsatellite CN184780_ssr41:41..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.352e-24
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  379 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGA 585
            P+ FAVFMVHLATIPITGTG  P++ + G AV+YN +KAW DQW+FWVGPFIGAAIAALYHQ ILRA A
Sbjct:  209 PIGFAVFMVHLATIPITGTGINPARSL-GVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRASA 276          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 49/67 (73.13%), Postives = 59/67 (88.06%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYNKD AWDD W+FWVGPFIGAA+AALYHQ ++RA
Sbjct:  215 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 49/67 (73.13%), Postives = 59/67 (88.06%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYNKD AWDD W+FWVGPFIGAA+AALYHQ ++RA
Sbjct:  214 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRA 279          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  373 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVK 585
            P+ FAVFMVHLATIPITGTG  P++ + GAAVIYN+ KAW D W+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  212 PIGFAVFMVHLATIPITGTGINPARSL-GAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRASAAK 281          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYNKD +WDD W+FWVGPFIGAA+AALYHQ ++RA
Sbjct:  215 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.247e-23
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLAT+ ITGTG  P++ + GAAVIYN+  AW D W+FWVGPFIGAA+AA+YHQ I+RA
Sbjct:  215 PIGFAVFLVHLATMGITGTGINPARSL-GAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRA 280          

HSP 2 Score: 30.4166 bits (67), Expect = 2.247e-23
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = -1
Query:  585 ARDSHVPVLAPLP 623
            ARDSHVP+LAPLP
Sbjct:  203 ARDSHVPILAPLP 215          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 47/67 (70.15%), Postives = 59/67 (88.06%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYNKD AW+D W+FWVGPF+GAA+AA+YHQ I+RA
Sbjct:  217 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRA 282          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 47/67 (70.15%), Postives = 59/67 (88.06%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYN+D AW+D W+FWVGPFIGAA+AA+YHQ I+RA
Sbjct:  217 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRA 282          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYN+D AW D W+FWVGPFIGAA+AA+YHQ I+RA
Sbjct:  220 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRA 285          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+I+NKD AWDD W+FWVGPFIGAA+AALYH  ++RA
Sbjct:  214 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRA 279          
The following BLAST results are available for this feature:
BLAST of CN184780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP24_ORYSJ5.352e-2475.36Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP15_ARATH9.128e-2473.13Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH9.128e-2473.13Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP23_ORYSJ2.034e-2371.83Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP14_ARATH2.034e-2371.64Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP11_MAIZE2.247e-2367.16Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP11_ORYSJ7.728e-2370.15Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE1.318e-2270.15Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE1.722e-2270.15Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ARATH1.722e-2270.15Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184780 ID=CN184780; Name=CN184780; organism=Citrus sinensis; type=EST; length=626bp
CCGAGGGCTAATAATTTTTTTTTTTTCCTTAAAGCACAACAATAATAATA
ATAATCCCATACGGTGAAAATAATACAAAGTAGAAAGAGACTGAACATTG
AAGAAGTGAATTCTAAGGAAAGTGCTTGAAAACAACAGAGGGGATTACAA
AAAAGCAAGCCCCCTCATTGCCTAAGAAACTTTTTGCCTACAACTCCGTG
AAAGCACAAATCACACCCCCCCTCATTATTCACTTTTTGAAACTTAACAC
ACCTCTACTCCTTCCCAGTTTTTTCTTTCCCATTTTAAATCATTAACCCC
ATGAAGATGTGGATAATCCACTTGTCGAAACTAAAATCAAACACGGGATT
GGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAAGATGAAT
TGGTGGTACAAAGCCGCAATTGCTGCACCGATGAAGGGTCCAACCCAGAA
GAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACAGCGGCCC
CCGAGACTCCTTTGCTGGGTTAATGCCCAGTGCCAGTGATTGGGATTGTG
GCCAAGTGTACCATGAACACAGCAAAATCCAATGGGGGAGCGGTGCCAAA
ACGGGGACATGGGAGTCTCTGGCGCT
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