CN184780

Overview
NameCN184780
Unique NameCN184780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184780_ssr41 microsatellite CN184780_ssr41:41..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYNKD +WDD W+FWVGPFIGAA+AALYH  ++RA
Sbjct:  214 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYNKD +WDD W+FWVGPFIGAA+AALYH  ++RA
Sbjct:  214 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYN+  AWDD W+FWVGPFIGAA+AA+YHQ ++RA
Sbjct:  216 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRA 281          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYN + AW+D W+FWVGP IGAA+AA+YHQ I+RA
Sbjct:  215 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRA 280          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.538e-21
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+++NK   W+D W+FWVGPFIGAA+AALYHQ ++RA
Sbjct:  218 PIGFAVFLVHLATIPITGTGINPARSL-GAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRA 283          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.538e-21
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA++YN+  AW+D W+FWVGPFIGAA+AA+YH  I+RA
Sbjct:  216 PIGFAVFLVHLATIPITGTGINPARSL-GAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRA 281          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  367 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKAL 585
            P+ FAVF+VHLATIPITGTG  P++ + GAAV+YN+  AW D W+FWVGP IGA +AA YH+ +LR  A KAL
Sbjct:  209 PIGFAVFVVHLATIPITGTGINPARSL-GAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKAL 280          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 43/67 (64.18%), Postives = 56/67 (83.58%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA++YN+  AW D W+FWVGPFIGAA+AA+YH  ++RA
Sbjct:  216 PIGFAVFLVHLATIPITGTGINPARSL-GAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRA 281          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = -3
Query:  385 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRA 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IY+    W   W+FWVGPF GAA+AA+YHQ +LRA
Sbjct:  222 PIGFAVFLVHLATIPITGTGINPARSL-GAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRA 287          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  370 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVI-YNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKA 585
            P+  AV +VHLATIPITGTG  P++ +  A V+     KAW   W+FWVGPF GAA A +YH +ILR  A KA
Sbjct:  197 PIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKA 269          
The following BLAST results are available for this feature:
BLAST of CN184780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP11_VICFA2.248e-2270.15Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.248e-2270.15Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP12_ORYSJ2.936e-2268.66Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP1_SOLLC3.247e-2167.16Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP2_PEA5.538e-2165.67Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP15_MAIZE5.538e-2165.67Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP27_ORYSJ2.104e-2063.01Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP13_ORYSJ2.104e-2064.18Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP16_MAIZE6.770e-1962.69Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ7.006e-1654.79Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184780 ID=CN184780; Name=CN184780; organism=Citrus sinensis; type=EST; length=626bp
CCGAGGGCTAATAATTTTTTTTTTTTCCTTAAAGCACAACAATAATAATA
ATAATCCCATACGGTGAAAATAATACAAAGTAGAAAGAGACTGAACATTG
AAGAAGTGAATTCTAAGGAAAGTGCTTGAAAACAACAGAGGGGATTACAA
AAAAGCAAGCCCCCTCATTGCCTAAGAAACTTTTTGCCTACAACTCCGTG
AAAGCACAAATCACACCCCCCCTCATTATTCACTTTTTGAAACTTAACAC
ACCTCTACTCCTTCCCAGTTTTTTCTTTCCCATTTTAAATCATTAACCCC
ATGAAGATGTGGATAATCCACTTGTCGAAACTAAAATCAAACACGGGATT
GGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAAGATGAAT
TGGTGGTACAAAGCCGCAATTGCTGCACCGATGAAGGGTCCAACCCAGAA
GAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACAGCGGCCC
CCGAGACTCCTTTGCTGGGTTAATGCCCAGTGCCAGTGATTGGGATTGTG
GCCAAGTGTACCATGAACACAGCAAAATCCAATGGGGGAGCGGTGCCAAA
ACGGGGACATGGGAGTCTCTGGCGCT
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