CN184778

Overview
NameCN184778
Unique NameCN184778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.248e-41
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  345 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFW 656
            K+++  FF QT HETTGG T +P G YA GYC++R+ +   +              YYGRGPIQLT   NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFW
Sbjct:   78 KKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-------------YYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFW 167          

HSP 2 Score: 82.8037 bits (203), Expect = 4.248e-41
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 2
Query:  170 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 367
            GT    +G I++ ++F+ +L  RNDARC A  FYTYDAFI AA +FPGFG +G++T RK+EIAAFF
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 85          

HSP 3 Score: 21.9422 bits (45), Expect = 4.248e-41
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 MTAQPPKPSCHE 693
            MT Q  KPSCH+
Sbjct:  168 MTPQGNKPSCHD 179          
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.213e-40
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  342 VKEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWNDCTATK 677
            ++ +L  FF QT HETTGG T     ++ WGYC+  +++ A+S              YYGRGPIQLT   NY   G ALG+DL+ NPDL++TD V+SFK+AIWFW      K
Sbjct:   84 IRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSPP------------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNK 182          

HSP 2 Score: 75.0998 bits (183), Expect = 1.213e-40
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 2
Query:  128 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFF 367
            C +  +     +G    G  +G +I++ +F  +LP R++++CPARGFYTYDAFI AA +FP FG SG    + +RE+AAFF
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFF 92          

HSP 3 Score: 23.8682 bits (50), Expect = 1.213e-40
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 MTAQPPKPSCHE 693
            MTAQ  KPSCH+
Sbjct:  176 MTAQGNKPSCHD 187          
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.315e-40
Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  345 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFW 656
            ++++  FF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+  DL+NNPDL+ATD  +SFK+AIWFW
Sbjct:   79 RKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFW 166          

HSP 2 Score: 88.5817 bits (218), Expect = 5.315e-40
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:  188 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 367
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG SG++T R++EIAAFF
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFF 86          
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.925e-40
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 3
Query:  345 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFW 656
            ++++  FF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+G +L+NNPDL+ATD  +SFK+AIWFW
Sbjct:   79 RKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFW 166          

HSP 2 Score: 87.0409 bits (214), Expect = 6.925e-40
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 2
Query:  188 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 367
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG +G++T R++EIAAFF
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFF 86          
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.759e-38
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  345 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWNDCTATKA 680
            K +L  FFAQT  ET+G         + WGYC + +++P +SD          P    YYGRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFW +  +T A
Sbjct:  115 KRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGA 227          

HSP 2 Score: 72.7886 bits (177), Expect = 4.759e-38
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  203 SREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 367
            +  MFE +LP RN+  CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFF
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFF 122          
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.442e-37
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  345 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWNDCTATK 677
            K ++  F AQ  HETTGGW  AP G YAWG CY  +++P SS            PG+ Y+GRGPIQ++WN NY   G+ALG D L NP+++A    ++F++A+WFW     TK
Sbjct:  101 KREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTK 213          

HSP 2 Score: 66.2402 bits (160), Expect = 1.442e-37
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 2
Query:  164 GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 364
            G+      +  I+S +++  L  +++DA CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAF 107          

HSP 3 Score: 21.1718 bits (43), Expect = 1.442e-37
Identity = 7/12 (58.33%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 MTAQPPKPSCHE 693
            MT +  KPSCH+
Sbjct:  207 MTPRDTKPSCHQ 218          
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.551e-36
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  345 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFW 656
            K ++  F AQT H T+GG        Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W W
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLW 246          

HSP 2 Score: 74.3294 bits (181), Expect = 5.551e-36
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  179 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 364
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.551e-36
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  345 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFW 656
            K ++  F AQT H T+GG        Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W W
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLW 246          

HSP 2 Score: 74.3294 bits (181), Expect = 5.551e-36
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  179 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 364
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.722e-35
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  110 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 364
            GG     G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF
Sbjct:   62 GGGGGGGGGG---GGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAF 143          

HSP 2 Score: 72.4034 bits (176), Expect = 2.722e-35
Identity = 35/104 (33.65%), Postives = 48/104 (46.15%), Query Frame = 3
Query:  345 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFW 656
            K ++  F  QT HET G W  A G +Y WGYC++                                 N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFW
Sbjct:  137 KREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM---------------------------------NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFW 207          

HSP 3 Score: 25.0238 bits (53), Expect = 2.722e-35
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  658 MTAQPPKPSCH 690
            MT Q PKPSCH
Sbjct:  208 MTPQSPKPSCH 218          
BLAST of CN184778 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.460e-34
Identity = 66/127 (51.97%), Postives = 82/127 (64.57%), Query Frame = 3
Query:  300 KLFQALVTLEMKPCVKEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWNDCTATK 677
            K F +  T       K +L  F  QT HETTGGW  AP G YAWGYC++++ +P+S+           PG+ YYGRGP+QL+WN NY  CGEAL V+LL NPDL+ATD VLSFK+A+WFW    A K
Sbjct:   39 KSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPK 165          

HSP 2 Score: 25.7942 bits (55), Expect = 8.460e-34
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 MTAQPPKPSCHE 693
            MT Q PKPSCH+
Sbjct:  159 MTPQAPKPSCHD 170          

HSP 3 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  194 KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 364
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AA++FP FG +G+  +RKRE+AAF
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAF 60          
The following BLAST results are available for this feature:
BLAST of CN184778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_PETHY4.248e-4150.00Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI8_ORYSJ1.213e-4046.43Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_TOBAC5.315e-4046.15Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC6.925e-4046.15Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI8_POPTR4.759e-3844.74Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI10_ORYSJ1.442e-3746.02Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ5.551e-3645.28Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI5.551e-3645.28Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIB_POPTR2.722e-3555.29Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_CARPA8.460e-3451.97Endochitinase OS=Carica papaya PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184778 ID=CN184778; Name=CN184778; organism=Citrus sinensis; type=EST; length=729bp
CCCCCCCGGGCGGCTTGCAGGGATATTCGCGCACAGAAGGCTCTTGCTTT
CAAAATGAGGCTCATNTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCT
TTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGG
TGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCA
TCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGA
TGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCA
AGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAG
AAATTGCTGCCTTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATG
GACCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGC
AAGTTAGCCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCC
TTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTG
CAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATC
CAGACCTACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGG
TTCTGGAATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAAGTCATT
ATCGACGAATGGAAACCATCAGCAAATGA
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