CN184776

Overview
NameCN184776
Unique NameCN184776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2442 contig Csv1_Contig2442:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 40/127 (31.50%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  261 EHDIQVEHSRKLKDLK----HIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQL 629
            ++ +  +++++++ LK    ++    G    + L +ID ++RLGI Y F+ EI++IL + Y  +S C    +DL   AL+FRLLRQ G+ +  ++F+ F  + G+F + +++ D+  L+ +YEAS +
Sbjct:   35 KNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKE-SLASDVLGLLNLYEASHV 156          
BLAST of CN184776 vs. ExPASy Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  339 FEGLVMIDAVQRLGIEYLFKDEIEEILQ---RQYIISSTCGG---HLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQF--NVSEDIGRLMEVYEASQLS 632
            FE + ++D +QRLGI   F++EI+E L    R +  +  C     H+ D+ + A+ FRLLRQ GY V AD+F NF  KEG F  F    ++ +  +  +Y ASQL+
Sbjct:  329 FEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLA 433          
The following BLAST results are available for this feature:
BLAST of CN184776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
5EAS_TOBAC9.811e-1231.50Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
KSA_ARATH3.728e-1139.62Ent-copalyl diphosphate synthase, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184776 ID=CN184776; Name=CN184776; organism=Citrus sinensis; type=EST; length=697bp
GAGGCTCATTTCTTCAGAGAAATATTATAAAGAAGCATATATATTCGATG
GCTTTCTCTTCCAGTTCTAGAGCAAAGTTGTCCGGTACCTCCCACATTTC
AAAGGCTCCAGATAAGATTTCAAAAACTAGCAGACCTAACCTCATTGAAT
TTACTCCTTCGCCTACTATCTATCAAAAAGGGGGCATTACTAGTGACAAT
ACAGTCGCTTCTTCTCCCCTTAAACACTTCACCCACACAACTAGACACCC
CAGCTTCTTCGAGCATGATATTCAAGTCGAACATTCTCGGAAACTGAAGG
ATCTCAAGCACATATTTAGCCTAGTCGGGGGAAATTCTTTTGAAGGATTA
GTCATGATTGATGCTGTTCAACGGCTAGGCATTGAGTACCTTTTCAAAGA
TGAGATTGAAGAAATTTTACAAAGGCAATATATCATATCTTCCACTTGTG
GTGGTCACCTCCATGATCTTCAAGAGGTTGCCCTTCGCTTTCGGCTGCTG
AGACAAGAAGGTTACTACGTGCCTGCGGATATGTTTAACAACTTTATGAT
CAAGGAAGGGAGATTCAGCCAGTTCAACGTAAGTGAAGACATAGGGAGAT
TGATGGAAGTATATGAAGCTTCGCAGCTAAGCATTAGCAGGCGAAGAAGG
GCTTGACGAAGCTGGACAATTTAGTGCGAAGATGCTCAATGAGTGCA
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