CN184773

Overview
NameCN184773
Unique NameCN184773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:11..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.336e-22
Identity = 63/156 (40.38%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQ-GIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 667
            E K   F+RA +AEF+A  LF++IS+ + +G    +KSN     V     ++ AFG  I  L      ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI    ++ G   +     L  G N +A G   G GLG EIIGT  LV  V +
Sbjct:    4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLA 157          
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 7.397e-22
Identity = 63/156 (40.38%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQ-GIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 667
            E K   F+RA +AEF+A  LF++IS+ + +G    +KSN     V     ++ AFG  I  L      ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI    ++ G   +     L  G N +A G   G GLG EIIGT  LV  V +
Sbjct:    4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLA 157          
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 9.660e-22
Identity = 64/162 (39.51%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMG----------VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 667
            E+K   F+RA +AEF+A  LF++IS+ + +G          +V+ N K S         AFG  I  L      ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI    ++ G   +     L  G N +AHG   G GLG EIIGT  LV  V +
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSL--------AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSL--GRNDLAHGVNSGQGLGIEIIGTLQLVLCVLA 155          
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 9.660e-22
Identity = 62/154 (40.26%), Postives = 87/154 (56.49%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 667
            E K   F+RA +AEF+AT LF++IS+ + +G      N + +      ++ AFG  I  L      ISG H+NPAVTLGL L+ ++S+ RAL Y++ QC+GAI    ++ G   +     L  G N +A G   G GLG EIIGT  LV  V +
Sbjct:    4 EFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSL--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLA 155          
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 4.794e-21
Identity = 63/162 (38.89%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMG----------VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 667
            E+K   F+RA +AEF+A  LF++IS+ + +G          +V+ N K S         AFG  I  L      ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI  + ++ G   +     L  G N +A G   G GLG EIIGT  LV  V +
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSL--------AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSL--GRNDLARGVNSGQGLGIEIIGTLQLVLCVLA 155          
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.794e-21
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 667
            E K   F+RA +AEF+A  LF++IS+ + +G      N + +      ++ AFG  I  L      ISG H+NPAVTLGL L+ ++S+ RAL Y++ QC+GAI    ++ G   +     L  G N +A G   G GLG EIIGT  LV  V +
Sbjct:    4 EFKKKLFWRAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSL--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLA 155          
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.794e-21
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMG----VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 667
            E K   F+RA +AEF+A  LF++IS+ + +G    V  + T  +      ++ AFG  I  L      ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI    ++ G   +     L  G N +A G   G GLG EIIGT  LV  V +
Sbjct:    4 EFKKKLFWRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDNSL--GRNELAPGVNSGQGLGIEIIGTLQLVLCVLA 157          
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMG----VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 667
            E K   F+RA +AEF+A  LF++IS+ + +G    V  + T  +      ++ AFG  I  L      ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI    ++ G   +     L  G N +A G   G GLG EIIGT  LV  V +
Sbjct:    4 EFKKKIFWRAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGNSL--GLNSLAPGVDSGQGLGIEIIGTLQLVLCVLA 157          
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 2
Query:  227 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 667
            +F++A  AEF+AT +F+ + V + +    S      V +  I+  FG  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY++ QCLGAI GAG++         G L  G   V    T G GL  E+I TF LV+T+F+
Sbjct:   33 AFWKAVSAEFLATLIFVLLGVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGL--GVTTVHGNLTAGHGLLVELIITFQLVFTIFA 176          
BLAST of CN184773 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 60/159 (37.74%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGV-----VKSNTKCSTVG----IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTV 661
            E K  +F+RA IAEF+A  LF++IS+   +G       K+N    TVG    I  ++ AFG  I  +      +SG H+NPAVTLG  L+ ++S+ +A+ Y++ QCLGA+    ++ G     +   L  G N ++ G + G GLG EI+ TF LV  V
Sbjct:    4 EFKKKAFWRAVIAEFLAMILFVFISIGAALGFNFPIEEKAN---QTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSL--GLNGLSPGVSAGQGLGVEILVTFQLVLCV 157          
The following BLAST results are available for this feature:
BLAST of CN184773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
AQP1_BOVIN4.336e-2240.38Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_SHEEP7.397e-2240.38Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE9.660e-2239.51Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_HUMAN9.660e-2240.26Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_RAT4.794e-2138.89Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_PONAB4.794e-2139.61Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_CANFA4.794e-2139.10Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP1_PIG8.178e-2139.10Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP4_MOUSE9.042e-2039.46Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQPA_RANES1.181e-1937.74Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006B06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184773 ID=CN184773; Name=CN184773; organism=Citrus sinensis; type=EST; length=667bp
GAGGCATCAAACGGCCACAAACAAAAAAGCAAGTGCTTCTTATTGACTAT
TTTGTGTTTTTGAGGGAGTAGCAGAAATGGAAGGCAAAGAAGAGGATGTT
AGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGACGGCGGC
TCAGACCCAAGATGGCAAGGACTACGTTGAACCCCCACCGGCGCCGCTCT
TCGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGGTATAGCC
GAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGACAGTGAT
GGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGGA
TTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTGCACAGCT
GGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGTTCTT
GGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATGCAGT
GTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCATGGGTGCC
GGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGCTA
CACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCTTG
TCTACACAGTTTTCTCT
back to top