CN184766

Overview
NameCN184766
Unique NameCN184766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:20..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.295e-59
Identity = 112/247 (45.34%), Postives = 165/247 (66.80%), Query Frame = 3
Query:   75 EYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            +Y K    ++ +E   + ++      ++E  +   +++ L+S   ++G V   L++ R++VK+S+GP++VV     +++E+L  G RV L+  TL I+  LP   DP+VY    E+   VSY  +GGL  QI E+RE++ELPL+ PELF  VGI+PPKGVLLYGPPGTGKTLLA+A+A+   A F++VV S  + KYIGE ARL+RE+F  A++  P IIF+DE+DAI  RR +  TS DRE+QRT+
Sbjct:   19 DYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTM 265          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.832e-58
Identity = 112/238 (47.06%), Postives = 159/238 (66.81%), Query Frame = 3
Query:  102 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            +++E +VR ++ +    ++E ++   ++  L+      G V+  LD++R IV+  +GPR+VV     +DK KL  GTRV LD  T+ I+  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PELF  VGI PPKGVLLYGPPG GKTL+A+AIA  ++A F++VV S ++ KYIGE ARL+ E+F  A++  P IIF+DEIDAIG +R  E T  +RE+ RTL
Sbjct:   24 RQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTL 261          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.392e-58
Identity = 114/240 (47.50%), Postives = 158/240 (65.83%), Query Frame = 3
Query:   96 QHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            Q +++ES  R V+      ++E  K + +++ L+S   +IG V   +DN R+IV++S+GPR++V     +D + L  G R  L+  +L I+  LP   D  +Y M   +    +Y  +GGL  QI E+RE++ELPL  P+LF +VGI PPKGVLLYGPPGTGKTLLARA+A   +A+FL+VV S ++ KYIGE ARL+RE+F  A+   P IIF+DEIDAIG  R    TS DRE+QRTL
Sbjct:   38 QFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTTSGDREVQRTL 277          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.392e-58
Identity = 115/250 (46.00%), Postives = 165/250 (66.00%), Query Frame = 3
Query:   75 EYRKKLLQHKEIE---SRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            E R++    KE+E        ++E LR  +    K   DL+ ++    I+G V   LD+ R+IVK+S+GP++V      VD+ +L  G  V L+  ++ ++  LP E D  V  M  ++  +VSY  +GGL +QIRE+RE +E PL  PELF +VG++PPKGVLLYGPPGTGKTLLA+A+A++ DA F+++ +  ++ K+IGE ARL+RE+F  AR+  P IIF+DEIDAIG RR  + TS DRE+QRTL
Sbjct:   54 EARRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTL 303          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.551e-57
Identity = 109/238 (45.80%), Postives = 159/238 (66.81%), Query Frame = 3
Query:  102 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            +++E +VR ++ +    ++E ++   ++  L+      G V+  LD +R IV+  +GPR+VV     +D++KL  GTRV LD  T+ ++  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PELF  VGI PPKGVLLYGPPG GKTL+A+A+A  ++A F++VV S ++ KYIGE ARL+ E+F  A++  P IIF+DEIDAIG +R  E T  +RE+ RTL
Sbjct:   27 RQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTL 264          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.551e-57
Identity = 112/262 (42.75%), Postives = 168/262 (64.12%), Query Frame = 3
Query:   30 MSEGEDAVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            M + E++  +RN M + RK       +E     ++       +E      +++  ++   +I  V   LD+ R+ VK+++GP +V+     +D+++L  G RV L+  T +I+  LP E DPVV  M  E+  +VSY  +GGL +Q+RE++E++ELPL  PELF ++GI+PPKGVLLYGPPGTGKTLLA+A+A   +A F+K+V+S  + KYIGE ARL+R +F  A++  P IIF+DEIDA+  +R    TS DRE+QRTL
Sbjct:   21 MLKEENSKTKRNLMWKIRK-------LEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTL 275          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.025e-57
Identity = 105/240 (43.75%), Postives = 163/240 (67.92%), Query Frame = 3
Query:   96 QHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            ++++IE   +SV+      ++E  K   +L  L++   I+G +L  + N ++I+K+S+GP++VV     ++ +++  G +V L+  +L ++  LP   DP V  M   D   + Y ++GGL  QI EL+E++ELPL+ PELF +VGI+PPKGVLLYGPPGTGKTLLA+A+A+   A F++++ S ++ KYIGE AR++RE+F  A++  P IIF+DEID+IG +R    TS DRE+QRTL
Sbjct:   44 EYRKIELEKKSVENKKVQYEREIRKLTSELDRLKTPPLIVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTL 283          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.025e-57
Identity = 113/264 (42.80%), Postives = 173/264 (65.53%), Query Frame = 3
Query:   30 MSEGEDAVRRRNAMTEYRKKLLQHK--EIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            + E  ++V+ R    E R   L+ +  +IES  R ++      ++E  K + +L  +++   IIG V+  + N+R+IV++S+GP+++V     +D++KL  G +V L+  TL I   +P   +P V  M   +   V Y  +GGL +QI+EL+E++ELPL+ PE F R+GI+PPKGVLLYG PGTGKTLLA+A+A   +A F++VV S ++ KYIG+ ++L+RE+F  AR   P IIF+DE+D+I  RR +E T ADRE+QRTL
Sbjct:   20 LGESTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTL 283          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 108/238 (45.38%), Postives = 164/238 (68.91%), Query Frame = 3
Query:  102 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            +++E +VR+++ +    ++E ++   ++  L+      G V+  LD+ER IV+  +GPR+VV     ++++KL  G RV LD  T+ I+  LP E DP V      +   V+Y+ +GGL  Q++ELRE+IELPL +PELF +VGI+PPKGVLLYGPPG GKTL+A+A+A++++A F++VV S ++ K+IGE ARL+ E+F  A++  P IIF+DEIDAIG +R  E T  +RE+ RTL
Sbjct:   25 RQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTL 262          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 113/264 (42.80%), Postives = 173/264 (65.53%), Query Frame = 3
Query:   30 MSEGEDAVRRRNAMTEYRKKLLQHK--EIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            + E  ++V+ R    E R   L+ +  +IES  R ++      ++E  K + +L  +++   IIG V+  + N+R+IV++S+GP+++V     +D++KL  G +V L+  TL I   +P   +P V  M   +   V Y  +GGL +QI+EL+E++ELPL +PE F R+GI+PPKGVLLYG PGTGKTLLA+A+A   +A F++VV S ++ KYIG+ ++L+RE+F  AR   P IIF+DE+D+I  RR +E T ADRE+QRTL
Sbjct:   20 LGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTL 283          
The following BLAST results are available for this feature:
BLAST of CN184766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
PSMR_ARCFU6.295e-5945.34Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_PYRFU1.832e-5847.06Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_METMJ2.392e-5847.50Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METKA2.392e-5846.00Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_PYRHO1.551e-5745.80Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_METTH1.551e-5742.75Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_UNCMA2.025e-5743.75Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_METAC2.025e-5742.80Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_PYRKO3.454e-5745.38Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_METMA3.454e-5742.80Proteasome-activating nucleotidase OS=Methanosarci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184766 ID=CN184766; Name=CN184766; organism=Citrus sinensis; type=EST; length=817bp
GAGGTACATCAATATCTCCGACTGCAACGATGAGCGAAGGAGAAGACGCC
GTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAGCA
CAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGCTG
CAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAAGT
GTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGCTT
GATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAGCA
AAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATATG
ACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTTGT
ATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGTGG
GTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTACCT
TTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCCAAGGG
CGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGCACGAG
CAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAAGTGCC
ATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAGATGTT
TGGATATGCACGTGATCATCAACCCTGCATCATTTTTATGGATGAAATTG
ATGCCATCGGTGGACGCCGTTTTAGTGAAGGAACCAGTGCAGATCGTGAA
ATTCAAAGGACACTGAT
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