CN184766

Overview
NameCN184766
Unique NameCN184766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:20..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.742e-11
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  456 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 767
            L   + +L + + + + NP  +    +   +GVLL GPPGTGKTL AR +A      F+    +   D     +A+ I EMF  AR + P  +F+DEIDAI GR
Sbjct:  497 LGGDVWDLLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAK-INEMFSIARRNAPAFVFVDEIDAIAGR 599          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.888e-11
Identity = 29/73 (39.73%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  543 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG 761
            P+ VL +G PGTGKT+LA+++A+ +      + ++++I +++G+ AR I E++  A    P +IF+DE+DAIG
Sbjct:  157 PRNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIG 229          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.383e-11
Identity = 41/120 (34.17%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  447 VGGLSDQIREL-RESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS-AIIDKYIGESARLIREMFGYA--------RDHQPCIIFMDEIDAIGGRRFS 776
            +GGL  + +++ R +    ++ PEL  ++  K  KG+LLYGPPGTGKTL+AR ++  ++    K+V+   ++ KY+G S   IR +F  A         D    +I  DE+D++  +R S
Sbjct:  277 IGGLDAEFQDIFRRAFNSRILPPELAEKLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNGKEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGS 396          
The following BLAST results are available for this feature:
BLAST of CN184766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
FTSHC_ARATH3.742e-1137.50Cell division protease ftsH homolog 12, chloroplas... [more]
PRS2_METTH4.888e-1139.73Putative 26S protease regulatory subunit homolog M... [more]
SEC18_CANAL6.383e-1134.17Vesicular-fusion protein SEC18 OS=Candida albicans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184766 ID=CN184766; Name=CN184766; organism=Citrus sinensis; type=EST; length=817bp
GAGGTACATCAATATCTCCGACTGCAACGATGAGCGAAGGAGAAGACGCC
GTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAGCA
CAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGCTG
CAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAAGT
GTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGCTT
GATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAGCA
AAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATATG
ACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTTGT
ATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGTGG
GTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTACCT
TTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCCAAGGG
CGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGCACGAG
CAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAAGTGCC
ATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAGATGTT
TGGATATGCACGTGATCATCAACCCTGCATCATTTTTATGGATGAAATTG
ATGCCATCGGTGGACGCCGTTTTAGTGAAGGAACCAGTGCAGATCGTGAA
ATTCAAAGGACACTGAT
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