CN184766

Overview
NameCN184766
Unique NameCN184766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:20..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.454e-52
Identity = 102/245 (41.63%), Postives = 163/245 (66.53%), Query Frame = 3
Query:   84 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            K+L +H E I+ +   +K+  R+ K+E  + ++++K +QSV  +IG+ +  +D    IV++S+G  YVV   S +D+EKL   + V L   +  ++  LP E D  +  +   +  +V+Y+ VGGL  Q +E+RE++ELPL   +L+ ++GI PP+GVLLYGPPGTGKT+L +A+A++  A+F++V  S  + KY+GE  R++R++F  AR++ P IIF+DEIDAI  +RF   T ADRE+QR L
Sbjct:   46 KRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 290          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.271e-51
Identity = 99/229 (43.23%), Postives = 154/229 (67.25%), Query Frame = 3
Query:  129 VKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            +KE+ ++ K+E  + ++++K +QSV  +IG+ L  +D    IV +++G  YVV   S +D+E L     V L   +  ++  LP E D  +  +  ++  +VSY+ VGGL  Q +E+RE++ELPL   +L+ ++GI PP+GVLLYGPPGTGKT+L +A+A++  ANF++VV S  + KY+GE  R++R++F  AR++ P IIF+DEIDAI  +RF   T ADRE+QR L
Sbjct:   30 IKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRIL 258          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.831e-51
Identity = 100/257 (38.91%), Postives = 161/257 (62.65%), Query Frame = 3
Query:   45 DAVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            D +   +  T+Y+K     + +E +   +K+  R  KKE+   ++++K +QSV  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  ++  +V YS +GG+  Q +E+RE++ELPL + EL+ ++GI+PP+GVL+YGPPG GKT+LA A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L
Sbjct:   30 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 286          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 8.241e-51
Identity = 104/245 (42.45%), Postives = 156/245 (63.67%), Query Frame = 3
Query:  102 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            ++++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE F  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H P IIFMDEID+IG  R   G+  D E+QRT+
Sbjct:   24 EDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS-RLEGGSGGDSEVQRTM 267          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.076e-50
Identity = 103/242 (42.56%), Postives = 155/242 (64.05%), Query Frame = 3
Query:   90 LLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            LL  +E  +    +K     A+++ +K +D    L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F  A D  P I+F+DEIDA+G +R+   +  +REIQRT+
Sbjct:   75 LLMEEEFVANQERLKPQEEKAEEDRSKVDD----LRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTM 312          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.406e-50
Identity = 112/277 (40.43%), Postives = 168/277 (60.65%), Query Frame = 3
Query:   21 TATMSEGEDAVRRRNAMTEYRKKLLQHK----EIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            T    E ++     N   +  K+ LQ K    E+ESR+  +        +ENL+  K E      +L  ++    I+G V+  +   +++VK+S+GP ++V     V+ + L  G RV L+  TLT++  LP   D     M  ++  NV Y  +GGL  Q++E+RE +ELPL +PELF +VGI+PPKG+LLYGPPGTGKTLLA+A+A+  +A F++VV S ++ K+IGE A L++++F  A++  P IIF+DEIDAI  +R    T  DRE+QRTL
Sbjct:   19 TEEFKEEKEINDNSNLKNDLLKEELQEKARIAELESRILKLELEKKELERENLQLMK-ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTL 294          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 199.904 bits (507), Expect = 1.406e-50
Identity = 101/245 (41.22%), Postives = 156/245 (63.67%), Query Frame = 3
Query:  102 KEIESRVRSVKENLRAAKKEFNKT-------EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            +E E ++RS  EN+R  + + N         +D+L+ LQ  G  +GEV++ + +++++VK     +Y+V     ++ + L +  RV L   +  + + L  + DP+V  M+ E   + +Y  VGGL+ QI+E++E IELP+ +PELF  +GI  PKGV+LYGPPGTGKTLLARA+A + D  F++V  + ++ KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R       D E+QRT+
Sbjct:   28 QETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTM 272          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.836e-50
Identity = 108/246 (43.90%), Postives = 157/246 (63.82%), Query Frame = 3
Query:  102 KEIESRVRSVKENLR---AAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTL 815
            +E+E +V    ++LR   A + E N      +++L+ L + G  + EV++ +   +++VK +   ++VV     VD  KLT  TR  L   + T+ R LP ++DP+V  M  E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+   D E+QRT+
Sbjct:   25 EELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTM 270          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.836e-50
Identity = 99/246 (40.24%), Postives = 159/246 (64.63%), Query Frame = 3
Query:   78 YRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            Y++   + + +E R   V++ +   K+E   + ++L  ++SV  I+G+ L P+D+   IV +++G  +VV   S VD+E L   T V L   +  I+  LP EVD  +  M   +  +V+Y  VGGL  Q +E++E++ELPL+  +L+ ++GI PP+GVLLYGPPGTGKT+L +A+A++  A F++V  S  + KY+GE  R++R++F  AR+  P I+F+DE+D+I  +RF   TSADRE+QR L
Sbjct:   13 YKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDASTSADREVQRVL 258          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.836e-50
Identity = 103/242 (42.56%), Postives = 155/242 (64.05%), Query Frame = 3
Query:   90 LLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            LL  +E  +    +K     A+++ +K +D    L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F  A D  P I+F+DEIDA+G +R+   +  +REIQRT+
Sbjct:   75 LLMEEEFVANQERLKPQEEKAEEDRSKVDD----LRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM 312          
The following BLAST results are available for this feature:
BLAST of CN184766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
PRS6B_ASPNG7.454e-5241.6326S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6B_SCHPO1.271e-5143.2326S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_MANSE4.831e-5138.9126S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS8_XENLA8.241e-5142.4526S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS4B_ARATH1.076e-5042.5626S proteasome regulatory subunit 4 homolog B OS=A... [more]
PSMR_METJA1.406e-5040.43Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PRS8_YEAST1.406e-5041.2226S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_DICDI1.836e-5043.9026S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS6B_ENCCU1.836e-5040.2426S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS4A_ARATH1.836e-5042.5626S proteasome regulatory subunit 4 homolog A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184766 ID=CN184766; Name=CN184766; organism=Citrus sinensis; type=EST; length=817bp
GAGGTACATCAATATCTCCGACTGCAACGATGAGCGAAGGAGAAGACGCC
GTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAGCA
CAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGCTG
CAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAAGT
GTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGCTT
GATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAGCA
AAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATATG
ACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTTGT
ATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGTGG
GTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTACCT
TTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCCAAGGG
CGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGCACGAG
CAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAAGTGCC
ATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAGATGTT
TGGATATGCACGTGATCATCAACCCTGCATCATTTTTATGGATGAAATTG
ATGCCATCGGTGGACGCCGTTTTAGTGAAGGAACCAGTGCAGATCGTGAA
ATTCAAAGGACACTGAT
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