CN184766

Overview
NameCN184766
Unique NameCN184766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:20..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.132e-50
Identity = 106/259 (40.93%), Postives = 161/259 (62.16%), Query Frame = 3
Query:   63 NAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRF-SEGTSADREIQRTL 815
            N +  Y +K+   ++ E  +    +NLR  + + N          ++++ LQ  G  +GEV++ +   +++VK     +YVV     +D +++    RV L   +  +++ LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKG+LLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R  S G S D E+QRT+
Sbjct:   15 NIVQYYTQKI---QDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTM 270          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.190e-49
Identity = 105/268 (39.18%), Postives = 166/268 (61.94%), Query Frame = 3
Query:   15 SPTATMSEGEDAVRRRNAMTEYRKKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            S T   S+GED +  R       K L +  E IE +   VK+ L+  ++E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V   S +++E L     V LD  +  ++  LP E D  +  +   +  +V+Y+ +GG   Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR L
Sbjct:   23 SITDVPSDGEDDLYAR------LKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRIL 284          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.190e-49
Identity = 99/245 (40.41%), Postives = 156/245 (63.67%), Query Frame = 3
Query:   84 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRIL 289          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.190e-49
Identity = 99/245 (40.41%), Postives = 156/245 (63.67%), Query Frame = 3
Query:   84 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRIL 289          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.190e-49
Identity = 99/245 (40.41%), Postives = 156/245 (63.67%), Query Frame = 3
Query:   84 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRIL 289          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.190e-49
Identity = 99/245 (40.41%), Postives = 156/245 (63.67%), Query Frame = 3
Query:   84 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRIL 289          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.190e-49
Identity = 98/236 (41.53%), Postives = 151/236 (63.98%), Query Frame = 3
Query:  108 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            +E    + +E LR  + +  +    +  L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GI+PPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F  A +  P I+F+DEIDA+G +R+   +  +REIQRT+
Sbjct:   82 MEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM 317          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.554e-49
Identity = 99/249 (39.76%), Postives = 159/249 (63.86%), Query Frame = 3
Query:   69 MTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            +T   ++L   + +E  ++    NL   +KE    ++++K +QSV  +IG+ L  +D    IV +++G  Y V   S +D+E L  G  V L   +  ++  LP E D  +  +  ++  ++SY  +GGL  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A+N  A+F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L
Sbjct:   40 LTTLERQLAHLQVMEDYIKLETRNL---EKELLHAQEEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRIL 285          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.554e-49
Identity = 107/279 (38.35%), Postives = 166/279 (59.50%), Query Frame = 3
Query:    6 TSISPTATMSEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKENLR---AAKKEFNKTEDD---LKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            T +      ++G DA  +   +T +   R KLL+ + I+  +    E +R     K +  K E++   +  L+     +G +   +D+   IV  S G  + V   S VDK++L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL  QI+E++ES+ELPL +PE +  +GIKPPKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H P I+F+DEIDA+G +R+   +  +REIQRT+
Sbjct:   30 TRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTM 308          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 2.030e-49
Identity = 102/244 (41.80%), Postives = 155/244 (63.52%), Query Frame = 3
Query:   84 KKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            +++  H  +E    S  E L+  +K+  + +  L+ ++     IG +   +D++  IV + + P Y V   S VDKE L  G  V+L   T++I+  L  + DP+V  M  +     SYS +GGL  QI+E++ES+ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A+   A FL++V S +I KY+G+  RL R++F  A ++ P I+F+DEIDAIG +R+   +  +REIQRT+
Sbjct:   63 ERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 306          
The following BLAST results are available for this feature:
BLAST of CN184766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
PRS8_SCHPO3.132e-5040.9326S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS6B_SOLTU1.190e-4939.1826S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_RAT1.190e-4940.4126S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA1.190e-4940.4126S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.190e-4940.4126S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN1.190e-4940.4126S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS4_ORYSJ1.190e-4941.5326S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS6B_CAEEL1.554e-4939.76Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS4_DROME1.554e-4938.3526S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_YEAST2.030e-4941.8026S protease regulatory subunit 4 homolog OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184766 ID=CN184766; Name=CN184766; organism=Citrus sinensis; type=EST; length=817bp
GAGGTACATCAATATCTCCGACTGCAACGATGAGCGAAGGAGAAGACGCC
GTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAGCA
CAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGCTG
CAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAAGT
GTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGCTT
GATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAGCA
AAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATATG
ACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTTGT
ATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGTGG
GTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTACCT
TTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCCAAGGG
CGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGCACGAG
CAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAAGTGCC
ATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAGATGTT
TGGATATGCACGTGATCATCAACCCTGCATCATTTTTATGGATGAAATTG
ATGCCATCGGTGGACGCCGTTTTAGTGAAGGAACCAGTGCAGATCGTGAA
ATTCAAAGGACACTGAT
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