CN184766

Overview
NameCN184766
Unique NameCN184766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:20..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.651e-49
Identity = 92/193 (47.67%), Postives = 129/193 (66.84%), Query Frame = 3
Query:  237 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            ++ + ++      ++VVG   +V    +  G RV +D +   I   LP  +DP V  M  E+  +V+YS VGG  DQI +LRE +ELPL++PE F  +GI PPKG+LLYGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + CIIF DEIDA+GG RF +G   D E+QRT+
Sbjct:  141 EDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM 333          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.651e-49
Identity = 90/193 (46.63%), Postives = 131/193 (67.88%), Query Frame = 3
Query:  237 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            D+ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +V+Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT+
Sbjct:  100 DDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.906e-49
Identity = 102/246 (41.46%), Postives = 153/246 (62.20%), Query Frame = 3
Query:   93 LQHKEIE----SRVRSVKENLRAA-KKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            L H E++    +++  V E  RA   +      +++  +Q     +G V+  +   +++VK +   +Y+V     V+ ++L +G RV L   +  + R LP +VDP+V  M+ E   + +Y  +GGL +QI+E+RE IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A +    F++V  S ++ KYIGE +RL+RE+F  AR+H P IIFMDEID+IG  R      +D E+QRT+
Sbjct:   75 LDHLEVQIAKKTKILRVLEQKRAELNRRVRFLREEISIVQEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTM 320          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.906e-49
Identity = 98/245 (40.00%), Postives = 155/245 (63.27%), Query Frame = 3
Query:   84 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP   D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRIL 289          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.906e-49
Identity = 107/279 (38.35%), Postives = 168/279 (60.22%), Query Frame = 3
Query:    6 TSISPTATMSEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKENLRAAK--KEFNKTEDDLKS----LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            T +      ++G DA  +   +T +   R KLL+ + I+  +   +E +R  +  K   + +++ +S    L+     +G +   +D+   IV  S G  + V   S VDK+ L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKPPKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REIQRT+
Sbjct:   31 TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.906e-49
Identity = 107/279 (38.35%), Postives = 168/279 (60.22%), Query Frame = 3
Query:    6 TSISPTATMSEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKENLRAAK--KEFNKTEDDLKS----LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            T +      ++G DA  +   +T +   R KLL+ + I+  +   +E +R  +  K   + +++ +S    L+     +G +   +D+   IV  S G  + V   S VDK+ L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKPPKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REIQRT+
Sbjct:   31 TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.906e-49
Identity = 107/279 (38.35%), Postives = 168/279 (60.22%), Query Frame = 3
Query:    6 TSISPTATMSEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKENLRAAK--KEFNKTEDDLKS----LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            T +      ++G DA  +   +T +   R KLL+ + I+  +   +E +R  +  K   + +++ +S    L+     +G +   +D+   IV  S G  + V   S VDK+ L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKPPKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REIQRT+
Sbjct:   31 TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.713e-49
Identity = 89/193 (46.11%), Postives = 131/193 (67.88%), Query Frame = 3
Query:  237 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +V+Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT+
Sbjct:  100 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.713e-49
Identity = 89/193 (46.11%), Postives = 131/193 (67.88%), Query Frame = 3
Query:  237 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +V+Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT+
Sbjct:   99 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 291          
BLAST of CN184766 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.713e-49
Identity = 89/193 (46.11%), Postives = 131/193 (67.88%), Query Frame = 3
Query:  237 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 815
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +V+Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT+
Sbjct:  100 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292          
The following BLAST results are available for this feature:
BLAST of CN184766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
PRS7_YEAST2.651e-4947.6726S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS7_ORYSJ2.651e-4946.6326S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS8_ENCCU5.906e-4941.4626S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS6B_MOUSE5.906e-4940.0026S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS4_RAT5.906e-4938.3526S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE5.906e-4938.3526S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN5.906e-4938.3526S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS7_SPIOL7.713e-4946.1126S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_PRUPE7.713e-4946.1126S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7A_ARATH7.713e-4946.1126S protease regulatory subunit 7 homolog A OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006B01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184766 ID=CN184766; Name=CN184766; organism=Citrus sinensis; type=EST; length=817bp
GAGGTACATCAATATCTCCGACTGCAACGATGAGCGAAGGAGAAGACGCC
GTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAGCA
CAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGCTG
CAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAAGT
GTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGCTT
GATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAGCA
AAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATATG
ACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTTGT
ATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGTGG
GTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTACCT
TTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAATTAAACCTCCCAAGGG
CGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAGACATTATTAGCACGAG
CAATTGCCAGTAACATAGATGCAAATTTTCTGAAGGTGGTTTCAAGTGCC
ATTATTGATAAGTACATTGGGGAAAGTGCAAGGTTGATAAGAGAGATGTT
TGGATATGCACGTGATCATCAACCCTGCATCATTTTTATGGATGAAATTG
ATGCCATCGGTGGACGCCGTTTTAGTGAAGGAACCAGTGCAGATCGTGAA
ATTCAAAGGACACTGAT
back to top