CN184762

Overview
NameCN184762
Unique NameCN184762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 6.713e-72
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  131 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 6.713e-72
Identity = 128/135 (94.81%), Postives = 133/135 (98.52%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  132 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 6.713e-72
Identity = 129/134 (96.27%), Postives = 132/134 (98.51%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 407
            FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMF FFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  128 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 8.768e-72
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  127 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.496e-71
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.953e-71
Identity = 126/135 (93.33%), Postives = 133/135 (98.52%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  131 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 1.953e-71
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  131 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.551e-71
Identity = 125/135 (92.59%), Postives = 133/135 (98.52%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMF FFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  144 FKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.551e-71
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CN184762 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.332e-71
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 3
Query:    6 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFSFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 410
            FKAG+QIF EGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMF FFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  132 FKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
The following BLAST results are available for this feature:
BLAST of CN184762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB2B_SOLLC6.713e-7295.56Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_TOBAC6.713e-7294.81Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_MAIZE6.713e-7296.27Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ8.768e-7297.04Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_SPIOL1.496e-7194.81Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE1.953e-7193.33Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_ORYSJ1.953e-7196.30Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_PINSY2.551e-7192.59Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_TOBAC2.551e-7194.07Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_PETSP3.332e-7194.07Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184762 ID=CN184762; Name=CN184762; organism=Citrus sinensis; type=EST; length=546bp
GAGGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTAC
TTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGC
TTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAG
GGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGAT
CCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAA
GGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTAGTTTCTTCG
TTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCAC
TTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGT
CCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTT
GTGATTATTTATAAAATGCTTCAATTTGATAAAAAAAAAAAAAAAA
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