CN184759

Overview
NameCN184759
Unique NameCN184759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184759_ssr26 microsatellite CN184759_ssr26:26..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6157 contig Csv1_Contig6157:25..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184759 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAE (50S ribosomal protein L15e OS=Pyrobaculum aerophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.710e-21
Identity = 66/169 (39.05%), Postives = 90/169 (53.25%), Query Frame = 3
Query:   60 AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLC-NPVHKHRELRGLTSAGKK 563
            AY++++  +RK   +V   L R    E+R+ P+IVRV RP R ++AR+LGYKAKQ                         +P   GV  +   +S R VAEERA RK   L VLNSYW+ +D  Y+YFEVIL+D     I+NDP  + +C   V + R +R L    KK
Sbjct:    5 AYSYMAMWYRKIGREVHERLMRKILIEWRKAPAIVRVERPFRLERARKLGYKAKQGVVVVRVRLMRGPFNRRRPDS--GRRPKRMGVYGITAWKSWRQVAEERAARKHPNLEVLNSYWVADDGIYRYFEVILIDCNLPTIKNDPLYSGICGREVPRRRIIRRLRERQKK 171          
BLAST of CN184759 vs. ExPASy Swiss-Prot
Match: RL15_BRANA (60S ribosomal protein L15 (Fragment) OS=Brassica napus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.211e-19
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3
Query:  108 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 224
            MRF+QRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    3 MRFVQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 41          

HSP 2 Score: 36.5798 bits (83), Expect = 5.211e-19
Identity = 19/29 (65.52%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  280 PRALCMVNPQTRVLLN*SFSAARGLLQRS 366
            P+ LCMVNPQTR LLN S   A  LL RS
Sbjct:   60 PKVLCMVNPQTRELLNSSSRGATVLLLRS 88          
BLAST of CN184759 vs. ExPASy Swiss-Prot
Match: RL15_BRUPA (60S ribosomal protein L15 (Fragment) OS=Brugia pahangi PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 3
Query:   54 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 224
            MGAY ++ ELWRKK+S+ MR+L R+RCW+YRQ  +I RV+RPTRP+KARRLGY + +
Sbjct:    1 MGAYRYMQELWRKKKSETMRYLLRIRCWQYRQLTAIHRVSRPTRPEKARRLGYLSNE 57          
The following BLAST results are available for this feature:
BLAST of CN184759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_PYRAE1.710e-2139.0550S ribosomal protein L15e OS=Pyrobaculum aerophil... [more]
RL15_BRANA5.211e-1989.7460S ribosomal protein L15 (Fragment) OS=Brassica n... [more]
RL15_BRUPA3.690e-1663.1660S ribosomal protein L15 (Fragment) OS=Brugia pah... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184759 ID=CN184759; Name=CN184759; organism=Citrus sinensis; type=EST; length=794bp
GAGGCCTAGTCGCACGGATACTGCGCAGCTCAGCTCAGCTCAGCTCAGAG
CCAATGGGGGCTTACACGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGTC
AGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAAC
ATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCGA
CGCTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTTTATCGTGTGCGGGT
AAGGCGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTGTATGGTA
AACCCACAAACCAGGGTGTTACTCAACTGAAGTTTCAGCGCAGCAAGAGG
TCTGTTGCAGAGGAGCGTGCCGGTCGTAAGTTGGGAGGTCTTAGGGTTCT
CAATTCTTACTGGATCAATGAGGACTCCACTTATAAGTACTTTGAGGTGA
TCTTGGTTGATCCTGCTCATAATGCCATCCGAAATGACCCAAGAATTAAT
TGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTGGTCTTACTTC
TGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACACTTGCACCACA
AGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACAATACTCTTTCC
CTCCGTCGCTACCGTTGATCATTGTTATGGCTTTGATGTTTTATCATCAG
TTGAGGGATTTTGTCTGGAGGACATAGTAACTGCCATTTTGAGTCTTTTA
GAGATTGAAATACTATGGAACATATCTTATTGTGAAACCTTACA
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