CN184757

Overview
NameCN184757
Unique NameCN184757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 100/203 (49.26%), Postives = 139/203 (68.47%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            +AKD+ F + +R  M  G++ L+DAV +TLGP+GRNVV+D+ FG+P++  DGVT+A+ IEL D  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G  +V +G NP+ LKRGID  V  +V  L K A+ I+  +++  V TISA  D+ +G MIA+A+ KVG +GV+                GM+ DRGY+SP F
Sbjct:    2 AAKDVKFSRDARERMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQSIVQEGHKAVAAGMNPMDLKRGIDLAVSEVVAALGKAAKKIKTSEEVAQVGTISANGDESVGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYF 204          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH603_FRAAA (60 kDa chaperonin 3 OS=Frankia alni (strain ACN14a) GN=groL3 PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 101/202 (50.00%), Postives = 143/202 (70.79%), Query Frame = 2
Query:  203 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVL-DEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            AK IAFD+ +R  ++ G+++L+DAV +TLGP+GRNVVL ++FG P + NDGV+IAR IEL +  E  GA L++EVA KTND AGDGTTTA++LA+ +++ GL +V +GANP+ LK+GI+  V  + EEL K+A+ +E ++ I + A+ISAG D  IG +IA+A+DKVG +GV+                GM  D+GYISP F
Sbjct:    2 AKMIAFDEEARRGLERGMNRLADAVKVTLGPKGRNVVLANKFGLPTITNDGVSIAREIELENSYERIGAELVKEVAKKTNDVAGDGTTTATILAQALVREGLRNVAAGANPLGLKKGIEVAVERVSEELSKQAKEVETKEQIASTASISAG-DSAIGGLIAEALDKVGKEGVVTVEESNTFGLELELTEGMRFDKGYISPYF 202          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 97/203 (47.78%), Postives = 140/203 (68.97%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            +AK++ F   +R  M  G+D L++AV +TLGP+GRNVV+++ FG+P++  DGVT+A+ IELAD  EN GA ++REVASK ND AGDGTTTA+VLA+ I++ G  +V +G NP+ +KRGID  V  +V++LE  A+ +    +I  VATISA  D+ +G ++A+A+DKVG +GV+                GM+ DRGY+SP F
Sbjct:    2 AAKEVKFASDARDRMLRGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELADKFENMGAQMLREVASKQNDKAGDGTTTATVLAQAIVREGSKAVAAGMNPMDVKRGIDLAVKAVVKDLETHAKKVSANSEIAQVATISANGDEEVGRILAEAMDKVGNEGVITVEEAKSLATELETVEGMQFDRGYLSPYF 204          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH601_SYNPW (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH7803) GN=groL1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 102/202 (50.50%), Postives = 143/202 (70.79%), Query Frame = 2
Query:  203 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            AK + F   SRAA++ G++ L+DAV +T+GPRGRNVVL++ FG+P +VNDG TIA+ I+L DP EN GA LI++VASKT D AGDGTTTA+VLA+ +++ GL +  +GA+P+ L+RG++K V  +V+ L +R++ + G D I+ VAT+SAG DD +G M+A+A+DKV  DGV+                GM  DRGY SP F
Sbjct:    2 AKLLKFSDESRAALERGMNALADAVRVTIGPRGRNVVLEKSFGAPDIVNDGDTIAKEIDLEDPFENIGAKLIQQVASKTKDKAGDGTTTATVLAQAMVEEGLRNTAAGASPIELRRGMEKAVALIVKGLGERSQSVSG-DAIRQVATVSAGGDDEVGRMVAEAMDKVTVDGVITVEESKSLATELEVTEGMAFDRGYSSPYF 202          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH601_ROSCS (60 kDa chaperonin 1 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=groL1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 104/201 (51.74%), Postives = 137/201 (68.16%), Query Frame = 2
Query:  206 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            K + F++ +R A++ G+D ++DAV  TLGPRGRNV +D+ FG+P V +DGVT+A+ IEL DP EN GA L+ EVA+KTND  GDGTTTA+VLA+ I+  GL  V +GANP+ +KRG+DK V  +V EL+  A P+  R DI  VA ISA  D  IG +IA+ ++KVG DGV+                GM+IDRGYISP F
Sbjct:    3 KQLYFNEEARRALKRGVDIVADAVKTTLGPRGRNVSIDKKFGAPTVTHDGVTVAKEIELKDPFENMGARLLVEVATKTNDVVGDGTTTATVLAQSIVNEGLKMVAAGANPMLIKRGLDKAVEAVVAELKSVAIPVRDRADIAHVAAISAA-DSEIGDLIAEVMEKVGKDGVITVEESKGIAFEKEYTEGMQIDRGYISPYF 202          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 97/203 (47.78%), Postives = 138/203 (67.98%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            +AK++ F   +R  M  G+D L++AV +TLGP+GRNVV+++ FG+P++  DGVT+A+ IEL D  EN GA ++REVASK ND AGDGTTTA+VLA+ I++ G  +V +G NP+ LKRGID  V  +V++LE  A+ +    +I  VATISA  D+ +G  +A+A+DKVG +GV+                GM+ DRGY+SP F
Sbjct:    2 AAKEVKFASDARDRMLRGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELKDKFENMGAQMLREVASKQNDKAGDGTTTATVLAQAIVREGAKAVAAGMNPIDLKRGIDLAVGTVVKDLESHAKKVSANSEIAQVATISANGDETVGRFLAEAMDKVGNEGVITVEEAKSLETELETVEGMQFDRGYLSPYF 204          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH601_BURVG (60 kDa chaperonin 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=groL1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 100/203 (49.26%), Postives = 139/203 (68.47%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            +AKD+ F   +R+ M  G++ L++AV +TLGP+GRNVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K ++P     +I  V +ISA +D  IG  IA+A+DKVG +GV+                GM+ DRGY+SP F
Sbjct:    2 AAKDVVFGDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGSISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYF 204          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH601_BURCH (60 kDa chaperonin 1 OS=Burkholderia cenocepacia (strain HI2424) GN=groL1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 100/203 (49.26%), Postives = 139/203 (68.47%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            +AKD+ F   +R+ M  G++ L++AV +TLGP+GRNVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K ++P     +I  V +ISA +D  IG  IA+A+DKVG +GV+                GM+ DRGY+SP F
Sbjct:    2 AAKDVVFGDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGSISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYF 204          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH601_BURCA (60 kDa chaperonin 1 OS=Burkholderia cenocepacia (strain AU 1054) GN=groL1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 100/203 (49.26%), Postives = 139/203 (68.47%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            +AKD+ F   +R+ M  G++ L++AV +TLGP+GRNVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K ++P     +I  V +ISA +D  IG  IA+A+DKVG +GV+                GM+ DRGY+SP F
Sbjct:    2 AAKDVVFGDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGSISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYF 204          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH60_VIBFM (60 kDa chaperonin OS=Vibrio fischeri (strain MJ11) GN=groL PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.792e-49
Identity = 102/203 (50.25%), Postives = 136/203 (67.00%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FG+P +  DGV++AR IEL D  +N GA +++EVAS+ ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D  +G +IA+A+DKVG DGV+                GM+ DRGY+SP F
Sbjct:    2 AAKDVKFGNDARIKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVVAAVEELKALSVPCADTKAIAQVGTISANSDSTVGNLIAEAMDKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYF 204          
The following BLAST results are available for this feature:
BLAST of CN184757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH604_RHILO4.435e-4949.2660 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]
CH603_FRAAA4.435e-4950.0060 kDa chaperonin 3 OS=Frankia alni (strain ACN14a... [more]
CH602_SPHAL4.435e-4947.7860 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]
CH601_SYNPW4.435e-4950.5060 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH601_ROSCS4.435e-4951.7460 kDa chaperonin 1 OS=Roseiflexus castenholzii (s... [more]
CH601_ERYLH4.435e-4947.7860 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]
CH601_BURVG4.435e-4949.2660 kDa chaperonin 1 OS=Burkholderia vietnamiensis ... [more]
CH601_BURCH4.435e-4949.2660 kDa chaperonin 1 OS=Burkholderia cenocepacia (s... [more]
CH601_BURCA4.435e-4949.2660 kDa chaperonin 1 OS=Burkholderia cenocepacia (s... [more]
CH60_VIBFM5.792e-4950.2560 kDa chaperonin OS=Vibrio fischeri (strain MJ11)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184757 ID=CN184757; Name=CN184757; organism=Citrus sinensis; type=EST; length=807bp
GAGGCTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTA
CTCCGTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCG
GCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAA
TCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGT
CTGCCAAAGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCC
GGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGG
GAGAAATGTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATG
GAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCT
GGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGG
TGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAG
GACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGG
ATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAG
GCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTG
GGAATGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTT
GGTCCTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTAC
TGTTGAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTC
AGTTTGT
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