CN184757

Overview
NameCN184757
Unique NameCN184757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.612e-53
Identity = 108/200 (54.00%), Postives = 146/200 (73.00%), Query Frame = 2
Query:  203 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISP 799
            AK + F + +R +MQ G+DKL+D V +TLGP+GRNVVLD+ FGSP + NDGV+IAR IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K ++P+EG++DI  VA ISA  D+ IG +IADA++KVG +GV+                GM+ DRGY+SP
Sbjct:    2 AKMLKFGEDARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVEGKEDIARVAAISAA-DEEIGKLIADAMEKVGNEGVITIEESKSMGTELDVVEGMQFDRGYVSP 200          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH60_CHLPD (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.612e-53
Identity = 108/203 (53.20%), Postives = 143/203 (70.44%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            +AKDI FD  +RA ++ G+DKL++AV +TLGP GRNV++D+ FG+P    DGVT+A+ IELAD +EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V EL   +R I G+ +I  V TISA ND  IG +IA+A+DKVG DGV+                GM+ DRGY+SP F
Sbjct:    2 TAKDIIFDSDARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELADAVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVLELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYF 204          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.635e-53
Identity = 108/201 (53.73%), Postives = 146/201 (72.64%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISP 799
            + K+I F + +R +++ G++ L++AV +TLGP+GRNVVL++ FGSP +VNDGVTIAR IEL+DP EN GA L++EVA+KTND AGDGTTTA VLA+ I++ GL +V +GANP+ +KRGI+K V   VE ++  A+ IE +  I  VATISA ND++IG +IADA++KVG DGV+                GM  DRGYISP
Sbjct:    2 AGKEIIFREDARRSLEKGVNALAEAVKITLGPKGRNVVLEKKFGSPMIVNDGVTIAREIELSDPFENMGAQLVKEVATKTNDVAGDGTTTACVLAQAIVREGLKNVAAGANPMIIKRGIEKAVDKAVEAIKNSAKTIESKSAIAQVATISA-NDEMIGNLIADAMEKVGKDGVITVEESKGTTTNLEIVEGMNFDRGYISP 201          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH60_NAUPA (60 kDa chaperonin OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.635e-53
Identity = 102/203 (50.25%), Postives = 143/203 (70.44%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            +AKD+ +   +R  + AG++KL+DAV +T+GP+GRNV+L   FG+P +  DGV++A+ IEL  P+EN GA L++EVASKT D AGDGTTTA+VLA  + K GL  +T+GANPV++KRG+DK V  ++ EL+K ++ +E ++ I  VATISA ND  IG +IA+A+DKVG DGV+                GM+ DRGY+SP F
Sbjct:    2 AAKDVVYSDVARNELLAGVEKLADAVRVTMGPKGRNVLLQRSFGAPHITKDGVSVAKEIELKHPVENMGAQLVKEVASKTADEAGDGTTTATVLAHAVFKEGLKYITAGANPVAVKRGMDKAVEAIIAELKKMSKTVENKEQIAQVATISANNDKKIGELIAEAMDKVGKDGVITVEEGKSLQDELEVVEGMQFDRGYLSPYF 204          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.635e-53
Identity = 109/201 (54.23%), Postives = 149/201 (74.13%), Query Frame = 2
Query:  200 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISP 799
            + K I F + +R A++ G++ L+DAV +TLGP+GRNVVL++ FGSP+++NDGV+IAR IELADP+EN GA L++EVA+KTND AGDGTTTA+VLA+ II+ GL +VT+GANP+ L++GI+K V   VEE++  A+P+E  + I  VA ISA ND+ IG +IA+A++KVG DGV+                GM  DRGYISP
Sbjct:    2 AGKQILFREDARRALERGVNALADAVKVTLGPKGRNVVLEKKFGSPQIINDGVSIAREIELADPVENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVTAGANPMILRKGIEKAVAKAVEEIKAIAKPVETSEAIAQVAAISA-NDEEIGKLIAEAMEKVGKDGVITVEESQGLGTTLEVVEGMSFDRGYISP 201          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH60_BACTR (60 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.635e-53
Identity = 108/200 (54.00%), Postives = 146/200 (73.00%), Query Frame = 2
Query:  203 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISP 799
            AK+I F + +R AM  G+DKL+DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL+  ++PI+G++ I  VA ISA  D+ +G +IA+A+++VG DGV+                GM+ DRGY SP
Sbjct:    2 AKEIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIQGKESIAQVAAISAA-DEEVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQFDRGYASP 200          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH60_GEOKA (60 kDa chaperonin OS=Geobacillus kaustophilus GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.128e-52
Identity = 108/200 (54.00%), Postives = 145/200 (72.50%), Query Frame = 2
Query:  203 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISP 799
            AK I F + +R AM  G+DKL+DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+ ++RGI+K V   VEEL+  ++PI+G++ I  VA ISA  D+ +G +IA+A+++VG DGV+                GM+ DRGY+SP
Sbjct:    2 AKQIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAA-DEEVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQFDRGYVSP 200          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH60_BACP3 (60 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.128e-52
Identity = 108/200 (54.00%), Postives = 145/200 (72.50%), Query Frame = 2
Query:  203 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISP 799
            AK I F + +R AM  G+DKL+DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+ ++RGI+K V   VEEL+  ++PI+G++ I  VA ISA  D+ +G +IA+A+++VG DGV+                GM+ DRGY+SP
Sbjct:    2 AKQIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAA-DEEVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQFDRGYVSP 200          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.128e-52
Identity = 106/202 (52.48%), Postives = 148/202 (73.27%), Query Frame = 2
Query:  203 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            AK +AF + SR +++ GI+ L+DAV +TLGP+GRNVVL++ +G+P++VNDGVTIA+ IEL D  EN GA L+REVA+KTND  GDGTTTA+VLA+ +I+ GL +V +G NP++LKRG++K +  +V+ + + A+P+EG D I  VAT+SAGND  +G MI++A+ KVG DGV+                GM+ DRGYISP F
Sbjct:    2 AKLVAFHEESRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEG-DMIAQVATVSAGNDPEVGAMISEAMAKVGKDGVITIEESKSLQTEMEIVEGMQFDRGYISPYF 202          
BLAST of CN184757 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.128e-52
Identity = 106/202 (52.48%), Postives = 148/202 (73.27%), Query Frame = 2
Query:  203 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQF 805
            AK +AF + SR +++ GI+ L+DAV +TLGP+GRNVVL++ +G+P++VNDGVTIA+ IEL D  EN GA L+REVA+KTND  GDGTTTA+VLA+ +I+ GL +V +G NP++LKRG++K +  +V+ + + A+P+EG D I  VAT+SAGND  +G MI++A+ KVG DGV+                GM+ DRGYISP F
Sbjct:    2 AKLVAFHEESRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEG-DMIAQVATVSAGNDPEVGAMISEAMAKVGKDGVITIEESKSLQTEMEIVEGMQFDRGYISPYF 202          
The following BLAST results are available for this feature:
BLAST of CN184757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOBA6.612e-5354.0060 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CHLPD6.612e-5353.2060 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH60_PELTS8.635e-5353.7360 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]
CH60_NAUPA8.635e-5350.2560 kDa chaperonin OS=Nautilia profundicola (strain... [more]
CH60_CARHZ8.635e-5354.2360 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]
CH60_BACTR8.635e-5354.0060 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH60_GEOKA1.128e-5254.0060 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH60_BACP31.128e-5254.0060 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=... [more]
CH602_THEVL1.128e-5252.4860 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB1.128e-5252.4860 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184757 ID=CN184757; Name=CN184757; organism=Citrus sinensis; type=EST; length=807bp
GAGGCTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTA
CTCCGTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCG
GCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAA
TCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGT
CTGCCAAAGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCC
GGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGG
GAGAAATGTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATG
GAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCT
GGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGG
TGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAG
GACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGG
ATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAG
GCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTG
GGAATGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTT
GGTCCTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTAC
TGTTGAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTC
AGTTTGT
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