CN184752

Overview
NameCN184752
Unique NameCN184752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1975 contig Csv1_Contig1975:315..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: S2542_XENLA (Solute carrier family 25 member 42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 54/185 (29.19%), Postives = 88/185 (47.57%), Query Frame = 1
Query:    7 VSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLK 561
            ++ AV+KTA AP++R K++ Q     + + R S   K       RT  ++G LSLWRGN+A ++R  P  A+ F   + +K+L        G                       Y LD  R R+A   K         ++ +I V+ +  + +G+  LYRGF+ + +G+I Y G+ F  Y++LK
Sbjct:   45 LAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSA--KEAYRLIYRTYMNDGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATLLTYPLDLVRARMAVTQK-------EMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLK 215          
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16
Identity = 54/186 (29.03%), Postives = 91/186 (48.92%), Query Frame = 1
Query:    4 GVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLK 561
            G + AVS+T  AP++R+K+L+Q       N         I   F   +++ G  SLWRGN  NVI+  P  A+ F   +  KR+    ++  G  + F                 +Y ++  +TR+A      +K G  Q+ G++D  KK L  +G++  Y+G+  + +GII Y G+   +Y++LK
Sbjct:  239 GGAGAVSRTCTAPLDRLKVLMQVHASRSNN-------MSILGGFTHMIREGGFRSLWRGNGINVIKIAPESAIKFMAYEQIKRIIGSNQETLGIHERFVAGSLAGVIAQSS----IYPMEVLKTRMA-----LRKTG--QYQGVLDCGKKILLQEGLSAFYKGYVPNMLGIIPYAGIDLAVYETLK 406          
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 55/187 (29.41%), Postives = 96/187 (51.34%), Query Frame = 1
Query:    4 GVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLK 561
            G + AVS+T  AP++R+K+L+Q       N         +   F + +++ GI SLWRGN  NVI+  P  A+ F   +  KR+    ++  G + +  AG+              +Y ++  +TR+A      +K G  Q+ G++D  KK L  +G++  Y+G+  + +GII Y G+   +Y++LK
Sbjct:  238 GGAGAVSRTCTAPLDRLKVLMQVHASRSNN-------MSMLGGFTQMIREGGIRSLWRGNGINVIKIAPESAIKFMAYEQMKRIIGSDQETLGIHERLVAGSLAGVIAQSS-----IYPMEVLKTRMA-----LRKTG--QYQGMLDCGKKILLKEGVSAFYKGYVPNMLGIIPYAGIDLAVYETLK 405          
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: SCM2B_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-B OS=Danio rerio GN=slc25a25b PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16
Identity = 52/186 (27.96%), Postives = 90/186 (48.39%), Query Frame = 1
Query:    4 GVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLK 561
            G + AVS+T  AP++R+K+L+Q       +        GI+  F + +++ G+ SLWRGN  NV++  P  A+ F   +  KRL    ++  G  +                   +Y ++  +TRLA        G   Q++G+ D  K   K +G+   Y+G+  + +GII Y G+   +Y++LK
Sbjct:  194 GGAGAVSRTCTAPLDRLKVLMQVHATRSNS-------MGIAGGFTQMIREGGLRSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSNQETLGILERLVSGSLAGAIAQSS----IYPMEVLKTRLA-------LGRTGQYSGIADCAKHIFKKEGMTAFYKGYIPNMLGIIPYAGIDLAVYETLK 361          
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 54/187 (28.88%), Postives = 96/187 (51.34%), Query Frame = 1
Query:    4 GVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLK 561
            G + AVS+T  AP++R+K+L+Q       N        GI   F + +++ G  SLWRGN  NV++  P  A+ F   +  KRL    ++    + +  AG+              +Y ++  +TR+A      +K G  Q++G++D  ++ L  +G+A  Y+G+  + +GII Y G+   +Y++LK
Sbjct:  194 GGAGAVSRTCTAPLDRLKVLMQVHASRSNN-------MGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRMA-----LRKTG--QYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLK 361          
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 56/208 (26.92%), Postives = 89/208 (42.79%), Query Frame = 1
Query:    4 GVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR---DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLLG 618
            GV+ AVS+T  +P+ER+K+L Q     ++     +  +GI          EG +  ++GN  NVIR  P  A+ F   + +K       D+     Y   F G                Y LD  R+RL       K      +NG+ D  K  ++ +G+AGLY+G   S +G+  Y  + F  Y++LK   +      + + S   G
Sbjct:  146 GVAGAVSRTCTSPLERLKILNQVGHMNLEQNAPKYKGRGIIQSLKTMYTTEGFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFLLNNNDQTHLTTYENLFVGGAAGVTSLLC-----TYPLDLIRSRLTVQVFGNK------YNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFG 342          
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.993e-15
Identity = 60/195 (30.77%), Postives = 90/195 (46.15%), Query Frame = 1
Query:    4 GVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYK--GISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKT-LKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLT 576
            G++   +KT  AP++RVK+L+Q  +         H YK  G+        + EG L L++GN A +IR FP  A+ F   +++K L   K    G+  +  AG+               Y LD  R RLA   K     GE  + G+I  +K    K  G  G YRG   + +G+  Y G+ F  + +LK V L+
Sbjct:   44 GIAGCCAKTTVAPLDRVKVLLQAHN---------HHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVHRLMAGSMAGMTAVIC-----TYPLDMVRVRLAFQVK-----GEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLS 219          
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: GDC_BOVIN (Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 60/195 (30.77%), Postives = 90/195 (46.15%), Query Frame = 1
Query:    4 GVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYK--GISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKT-LKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLT 576
            G++   +KT  AP++RVK+L+Q  +         H Y+  G+        K EG L L++GN A +IR FP  A+ F   +++K L   K    G+  +  AG+               Y LD  R RLA   K     GE  + G+I  +K    K  G  G YRG   + +G+  Y G+ F  + +LK V L+
Sbjct:   42 GIAGCCAKTTVAPLDRVKVLLQAHN---------HHYRHLGVFSTLRAVPKKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGVSGHVHRLMAGSMAGMTAVIC-----TYPLDMVRVRLAFQVK-----GEHTYTGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLS 217          
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 54/187 (28.88%), Postives = 95/187 (50.80%), Query Frame = 1
Query:    4 GVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLK 561
            G + AVS+T  AP++R+K+L+Q       N         I   F + +++ G  SLWRGN  NV++  P  A+ F   +  KRL    ++    + +  AG+              +Y ++  +TR+A      +K G  Q++G++D  K+ L  +G+A  Y+G+  + +GII Y G+   +Y++LK
Sbjct:  194 GGAGAVSRTCTAPLDRLKVLMQVHASRSNN-------MCIIGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRMA-----LRKTG--QYSGMLDCAKRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLK 361          
BLAST of CN184752 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 58/189 (30.69%), Postives = 88/189 (46.56%), Query Frame = 1
Query:    4 GVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRD---GYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLK 561
            G + AVS+T  AP +R+K+ +Q      K  RL     G+  C      + GI S WRGN  NVI+  P  A+ F   D  KRL   KK  +    + +  AG+              +Y ++  +TRL     A +K G+    G+I    K    +GI   Y+G+  + +GII Y G+   +Y++LK
Sbjct:  256 GAAGAVSRTCTAPFDRIKVYLQVNSS--KTNRL-----GVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKRLIQKKKGNEEISTFERLCAGSAAGAISQST-----IYPMEVMKTRL-----ALRKTGQLD-RGIIHFAHKMYTKEGIRCFYKGYLPNLIGIIPYAGIDLAIYETLK 426          
The following BLAST results are available for this feature:
BLAST of CN184752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
S2542_XENLA2.647e-1629.19Solute carrier family 25 member 42 OS=Xenopus laev... [more]
SCMC2_XENLA3.458e-1629.03Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENTR4.516e-1629.41Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2B_DANRE7.703e-1627.96Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_HUMAN2.241e-1528.88Calcium-binding mitochondrial carrier protein SCaM... [more]
MCFB_DICDI2.241e-1526.92Mitochondrial substrate carrier family protein B O... [more]
GDC_HUMAN4.993e-1530.77Graves disease carrier protein OS=Homo sapiens GN=... [more]
GDC_BOVIN6.521e-1530.77Graves disease carrier protein OS=Bos taurus GN=SL... [more]
SCMC2_RAT8.517e-1528.88Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC2_CAEEL8.517e-1530.69Putative calcium-binding mitochondrial carrier F55... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184752 ID=CN184752; Name=CN184752; organism=Citrus sinensis; type=EST; length=659bp
GAGGGAGTTTCAGCAGCTGTTTCCAAGACTGCAGCTGCTCCTATTGAGCG
GGTTAAGCTTTTGATTCAGAATCAAGATGAGATGATCAAGAATGGTCGGC
TCTCGCATCCGTACAAGGGGATTTCTGATTGCTTTGCTAGAACTGTTAAG
GATGAAGGCATACTATCTCTTTGGAGAGGCAACACTGCCAATGTTATCAG
ATACTTCCCTACCCAGGCCCTGAACTTTGCATTCAAGGATTACTTTAAGA
GGCTGTTTAACTTCAAGAAAGACAGAGATGGCTACTGGAAGTGGTTTGCT
GGGAACTTGGCATCTGGTGGGGCTGCTGGTGCTTCATCGCTTCTTTTTGT
GTATTCGCTTGACTATGCAAGAACACGTTTGGCAAATGATGCTAAGGCAG
CTAAAAAGGGTGGGGAAAGGCAGTTTAATGGTTTGATTGATGTCTACAAG
AAGACTCTGAAATCTGATGGCATTGCTGGGCTCTACCGTGGATTCAGCAT
CTCATGTGTTGGAATTATAGTGTATCGTGGGCTCTACTTTGGAATGTATG
ATTCTCTGAAACCTGTGGTGTTGACTGATGGGATGCAGGATAGTTTCTTG
GCTAGCTTCTTACTTGGCTGGGGAATCACAATTGGTGCTGGGTTTGGCTT
CTTACCCAA
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