CN184748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.035e-24 Identity = 78/213 (36.62%), Postives = 104/213 (48.83%), Query Frame = 3 Query: 198 TTRRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQAKE--------GSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRN-----ARDWKLKEIKNGRLAMVAMLGIFVQA 773 T+R+ + A + +W+P V P +LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AM V GI TGI W+EAGA A S TL QLLLMG+ E+KR++D+ P SQ+ E F + + N KL EIK+ RLAM+AML + +A Sbjct: 43 TSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAW--TGI----PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 249
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.883e-24 Identity = 82/227 (36.12%), Postives = 115/227 (50.66%), Query Frame = 3 Query: 165 ITSAFLPAKPG---TTRRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQAKE------------GSFFGLEA-SXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQA 773 + +A L A+ G T +R+ TV+ A + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+EAGA A S TL QL+LMG+ E+KR++D+ P SQ+ E +F G + D K+ EIK+ RLAM+AML + +A Sbjct: 26 LLAAPLAARVGGAATPKRF--TVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA 244
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.174e-23 Identity = 78/227 (34.36%), Postives = 109/227 (48.02%), Query Frame = 3 Query: 165 ITSAFLPAKPGTTRRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKE------------GSFFGLEA-SXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQA 773 + A + A+ T +R++ + +W+P V P +LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+EAGA F F S L QLLLMG+ E+KR++D+ SQ+ + +F G + D KL EIK+ RLAM+AML + +A Sbjct: 27 LLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA 244
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.610e-23 Identity = 74/204 (36.27%), Postives = 99/204 (48.53%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 D P YL G GD+G+D GL DP++ Y + EL+HAR+A+ G GIL +LL + G++ PVW++AGA F L VQ++LMG AE R + EG L+ A D + K+KEIKNGRLAM + LG FVQA VT GP+ N+ +HL+DP Sbjct: 49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-------ANGGSEGFLDDLDT--------LYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22 Identity = 75/211 (35.55%), Postives = 101/211 (47.87%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM--------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 +PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++ VW++AGA F S ++ Q++LMG E R D I PG GSF L A+D + K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 258
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22 Identity = 73/211 (34.60%), Postives = 103/211 (48.82%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 +PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++ VW++AG+ F S ++ VQ++LMG E R +D + PG GSF L A D + K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 245
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.933e-22 Identity = 71/209 (33.97%), Postives = 102/209 (48.80%), Query Frame = 3 Query: 270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++ VW++AGA F S ++ VQ++LMGF E R +D + PG G+F L A D + K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPG-----GAFDPL--------------------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.933e-22 Identity = 71/209 (33.97%), Postives = 102/209 (48.80%), Query Frame = 3 Query: 270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++ VW++AGA F S ++ VQ++LMGF E R +D + PG G+F L A D + K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPG-----GAFDPL--------------------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.414e-22 Identity = 76/214 (35.51%), Postives = 99/214 (46.26%), Query Frame = 3 Query: 240 RPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV-TGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 R WL + P YL G GD+G+D GL DPE+ + Y + E++HAR+A+ G GIL +LL G++ PVW++AGA F L VQ++LMG E Y G A EG A D + K+KEIKNGRLAM + G FVQA VT GPI N+ +HL+DP Sbjct: 44 RAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIE-----GYRVNGGPAGEG------------LDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21 Identity = 75/211 (35.55%), Postives = 102/211 (48.34%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G++ VW++AGA F S ++ Q++LMG E R D I PG GSF L A D + K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP Sbjct: 67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPG-----GSFDPL--------------------GLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 252 The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bpback to top |