CN184748

Overview
NameCN184748
Unique NameCN184748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.035e-24
Identity = 78/213 (36.62%), Postives = 104/213 (48.83%), Query Frame = 3
Query:  198 TTRRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQAKE--------GSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRN-----ARDWKLKEIKNGRLAMVAMLGIFVQA 773
            T+R+ +     A  + +W+P V        P +LDG+L GDFGFDPLGLG+DP  L+WY +AEL+H R+AM  V GI        TGI     W+EAGA     A  S  TL   QLLLMG+ E+KR++D+  P SQ+ E           F                        +  + N         KL EIK+ RLAM+AML  + +A
Sbjct:   43 TSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAW--TGI----PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.883e-24
Identity = 82/227 (36.12%), Postives = 115/227 (50.66%), Query Frame = 3
Query:  165 ITSAFLPAKPG---TTRRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQAKE------------GSFFGLEA-SXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQA 773
            + +A L A+ G   T +R+  TV+ A  + +W+P V        P +LDG+L GD+GFDPLGLG+DP  L+WY +AEL+H R+AMA V GI        +GI     W+EAGA     A  S  TL   QL+LMG+ E+KR++D+  P SQ+ E             +F G +                        D       K+ EIK+ RLAM+AML  + +A
Sbjct:   26 LLAAPLAARVGGAATPKRF--TVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA 244          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.174e-23
Identity = 78/227 (34.36%), Postives = 109/227 (48.02%), Query Frame = 3
Query:  165 ITSAFLPAKPGTTRRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKE------------GSFFGLEA-SXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQA 773
            +  A + A+  T +R++        + +W+P V        P +LDG+L GDFGFDPLGLG+DP  L+WY +AEL+H R+AMA V GI        +GI     W+EAGA       F F S   L   QLLLMG+ E+KR++D+    SQ+ +             +F G +                        D       KL EIK+ RLAM+AML  + +A
Sbjct:   27 LLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA 244          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.610e-23
Identity = 74/204 (36.27%), Postives = 99/204 (48.53%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            D P YL G   GD+G+D  GL  DP++   Y + EL+HAR+A+ G  GIL  +LL +  G++   PVW++AGA  F       L                VQ++LMG AE  R        +   EG    L+                     A D     + K+KEIKNGRLAM + LG FVQA VT  GP+ N+ +HL+DP
Sbjct:   49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-------ANGGSEGFLDDLDT--------LYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 75/211 (35.55%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM--------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AGA  F                 S   ++  Q++LMG  E  R          D I PG     GSF  L                      A+D     + K+KEIKNGRLAM +M G FVQA VT  GPI+N+ +HL+DP
Sbjct:   73 EPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 258          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 73/211 (34.60%), Postives = 103/211 (48.82%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++ VQ++LMG  E  R         +D + PG     GSF  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 245          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.933e-22
Identity = 71/209 (33.97%), Postives = 102/209 (48.80%), Query Frame = 3
Query:  270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F ++L   G++    VW++AGA  F                 S   ++ VQ++LMGF E  R         +D + PG     G+F  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GPI+N+ +H++DP
Sbjct:   64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPG-----GAFDPL--------------------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.933e-22
Identity = 71/209 (33.97%), Postives = 102/209 (48.80%), Query Frame = 3
Query:  270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F ++L   G++    VW++AGA  F                 S   ++ VQ++LMGF E  R         +D + PG     G+F  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GPI+N+ +H++DP
Sbjct:   64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPG-----GAFDPL--------------------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.414e-22
Identity = 76/214 (35.51%), Postives = 99/214 (46.26%), Query Frame = 3
Query:  240 RPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV-TGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            R  WL     + P YL G   GD+G+D  GL  DPE+ + Y + E++HAR+A+ G  GIL  +LL    G++   PVW++AGA  F       L                VQ++LMG  E      Y   G  A EG                           A D     + K+KEIKNGRLAM +  G FVQA VT  GPI N+ +HL+DP
Sbjct:   44 RAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIE-----GYRVNGGPAGEG------------LDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21
Identity = 75/211 (35.55%), Postives = 102/211 (48.34%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL+G  AGD+G+D  GL  DPE+     + E++HAR+AM G  G L  +LL  +G++    VW++AGA  F                 S   ++  Q++LMG  E  R          D I PG     GSF  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPG-----GSFDPL--------------------GLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 252          
The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB4_SPIOL4.035e-2436.62Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC6.883e-2436.12Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.174e-2334.36Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB2_DUNTE7.610e-2336.27Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY2.214e-2235.55Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_ORYSJ3.777e-2234.60Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_ORYSJ4.933e-2233.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.933e-2233.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO8.414e-2235.51Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA1.099e-2135.55Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006A11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bp
GAGGGTTAAATCTTAAATGAATGCGTGGATGCATACCTGAACAAAAAAAT
AGTTGATAGAGAGAGAAACAAAAAATGGCCGTTGCAGTTGGAAGAGGCTT
CCTCCTTCAGCCTTCCTCTTCATCGTCCTTCATTTCTAAGGACGTAAATA
AATCGTCAATAGGTATCACTAGCGCATTTCTGCCTGCCAAACCAGGAACC
ACTCGACGTTATTTGGCAACTGTGGTTCGAGCCCAGCAGCGACCAACATG
GCTCCCTGGAGTCGACCCTCCTCCCTACCTTGATGGAACTTTGGCTGGAG
ATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCGGAGAGCTTAAGG
TGGTATGTGCAGGCGGAGTTGGTGCATGCCCGTTTTGCTATGGCTGGAGT
TGCTGGAATTCTTTTCACAGATTTACTCCGCGTAACAGGGATCCGAGAGT
TGCCAGTCTGGTATGAAGCCGGTGCAGTTGAATTCAAGTTTGCCAGCACA
AGAACTTTGTTCATCGTGCAACTACTATTGATGGGCTTCGCTGAAACCAA
AAGGTATATGGATTACATTAGTCCTGGATCACAAGCCAAAGAGGGATCCT
TCTTTGGATTGGAAGCTTCGCTGGAAGGTTTAGAGCCTGGCTACCCTGGA
GGTCCTCTGCTAAACCCTCTTGGCCTGGCTAAAGATATCAGAAATGCTCG
CGACTGGAAGCTTAAAGAGATTAAGAATGGACGACTTGCAATGGTAGCTA
TGCTTGGTATCTTTGTGCAAGCTTCTGTGACTCATGTTGGTCCAATTGAT
AACATTTTGGAGCACCTCTCCGATCCATGGCACAAAACCATT
back to top