CN184748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21 Identity = 70/211 (33.18%), Postives = 104/211 (49.29%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++ VW++AG+ F S +++ Q++LMG E R +D + PG GSF L A+D + + K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP Sbjct: 63 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPG-----GSFDPL--------------------GLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21 Identity = 72/212 (33.96%), Postives = 100/212 (47.17%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM---------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 +PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++ VW++AG+ F S ++ Q++LMG E R D + PG GSF L A D + K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPG-----GSFDPL--------------------GLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21 Identity = 74/223 (33.18%), Postives = 105/223 (47.09%), Query Frame = 3 Query: 234 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + RP +L P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++ VW++AG+ F S ++ Q++LMGF E R +D I PG G+F L A D + K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP Sbjct: 52 EDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDP 249
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21 Identity = 72/209 (34.45%), Postives = 100/209 (47.85%), Query Frame = 3 Query: 270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++ VW++AG+ F S ++ Q++LMGF E R +D I PG G+F L A D + K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPG-----GAFDPL--------------------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21 Identity = 72/211 (34.12%), Postives = 101/211 (47.87%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 +PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++ VW++AG+ F S ++ Q++LMG E R D I PG GSF L A D + K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP Sbjct: 54 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 239
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21 Identity = 74/223 (33.18%), Postives = 104/223 (46.64%), Query Frame = 3 Query: 234 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + RP +L P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G+ VW++AG+ F S ++ Q++LMGF E R +D I PG G+F L A D + K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP Sbjct: 52 EDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21 Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 +PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++ VW++AG+ F S ++ Q++LMG E R +D + PG GSF L A D + K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 246
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21 Identity = 71/211 (33.65%), Postives = 101/211 (47.87%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++ VW++AG+ F S ++ Q++LMG E R +D + PG GSF L A D + K+KE+KNGRLAM +M G FVQA VT GP++N+ +HLSDP Sbjct: 67 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 252
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21 Identity = 71/209 (33.97%), Postives = 100/209 (47.85%), Query Frame = 3 Query: 270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++ VW++AGA F S ++ Q++LMG E R +D + PG G+F L A D + K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADP 248
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21 Identity = 74/223 (33.18%), Postives = 104/223 (46.64%), Query Frame = 3 Query: 234 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + RP +L P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G+ VW++AG+ F S ++ Q++LMGF E R +D I PG G+F L A D + K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP Sbjct: 24 EDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 221 The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bpback to top |