CN184748

Overview
NameCN184748
Unique NameCN184748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 70/211 (33.18%), Postives = 104/211 (49.29%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S  +++  Q++LMG  E  R         +D + PG     GSF  L                      A+D   + + K+KE+KNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   63 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPG-----GSFDPL--------------------GLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 72/212 (33.96%), Postives = 100/212 (47.17%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM---------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R           D + PG     GSF  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPG-----GSFDPL--------------------GLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 74/223 (33.18%), Postives = 105/223 (47.09%), Query Frame = 3
Query:  234 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + RP +L       P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F ++L   G++    VW++AG+  F                 S   ++  Q++LMGF E  R         +D I PG     G+F  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GPI+N+ +H++DP
Sbjct:   52 EDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDP 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 72/209 (34.45%), Postives = 100/209 (47.85%), Query Frame = 3
Query:  270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F ++L   G++    VW++AG+  F                 S   ++  Q++LMGF E  R         +D I PG     G+F  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GPI+N+ +HL+DP
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPG-----GAFDPL--------------------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 72/211 (34.12%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R          D I PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   54 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 239          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21
Identity = 74/223 (33.18%), Postives = 104/223 (46.64%), Query Frame = 3
Query:  234 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + RP +L       P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F ++L   G+     VW++AG+  F                 S   ++  Q++LMGF E  R         +D I PG     G+F  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GPI+N+ +H++DP
Sbjct:   52 EDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GP++N+ +H++DP
Sbjct:   61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 246          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 71/211 (33.65%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GP++N+ +HLSDP
Sbjct:   67 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 252          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 71/209 (33.97%), Postives = 100/209 (47.85%), Query Frame = 3
Query:  270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AGA  F                 S   ++  Q++LMG  E  R         +D + PG     G+F  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GPI+N+ +H++DP
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADP 248          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21
Identity = 74/223 (33.18%), Postives = 104/223 (46.64%), Query Frame = 3
Query:  234 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + RP +L       P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F ++L   G+     VW++AG+  F                 S   ++  Q++LMGF E  R         +D I PG     G+F  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GPI+N+ +H++DP
Sbjct:   24 EDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 221          
The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB23_APIGR1.435e-2133.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL1.435e-2133.96Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB24_SOLLC2.448e-2133.18Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_GOSHI2.448e-2134.45Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_CUCSA2.448e-2134.12Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP4.176e-2133.18Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_MAIZE4.176e-2133.18Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA5.454e-2133.65Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_LEMGI5.454e-2133.97Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_SOLLC7.123e-2133.18Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bp
GAGGGTTAAATCTTAAATGAATGCGTGGATGCATACCTGAACAAAAAAAT
AGTTGATAGAGAGAGAAACAAAAAATGGCCGTTGCAGTTGGAAGAGGCTT
CCTCCTTCAGCCTTCCTCTTCATCGTCCTTCATTTCTAAGGACGTAAATA
AATCGTCAATAGGTATCACTAGCGCATTTCTGCCTGCCAAACCAGGAACC
ACTCGACGTTATTTGGCAACTGTGGTTCGAGCCCAGCAGCGACCAACATG
GCTCCCTGGAGTCGACCCTCCTCCCTACCTTGATGGAACTTTGGCTGGAG
ATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCGGAGAGCTTAAGG
TGGTATGTGCAGGCGGAGTTGGTGCATGCCCGTTTTGCTATGGCTGGAGT
TGCTGGAATTCTTTTCACAGATTTACTCCGCGTAACAGGGATCCGAGAGT
TGCCAGTCTGGTATGAAGCCGGTGCAGTTGAATTCAAGTTTGCCAGCACA
AGAACTTTGTTCATCGTGCAACTACTATTGATGGGCTTCGCTGAAACCAA
AAGGTATATGGATTACATTAGTCCTGGATCACAAGCCAAAGAGGGATCCT
TCTTTGGATTGGAAGCTTCGCTGGAAGGTTTAGAGCCTGGCTACCCTGGA
GGTCCTCTGCTAAACCCTCTTGGCCTGGCTAAAGATATCAGAAATGCTCG
CGACTGGAAGCTTAAAGAGATTAAGAATGGACGACTTGCAATGGTAGCTA
TGCTTGGTATCTTTGTGCAAGCTTCTGTGACTCATGTTGGTCCAATTGAT
AACATTTTGGAGCACCTCTCCGATCCATGGCACAAAACCATT
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