CN184748

Overview
NameCN184748
Unique NameCN184748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21
Identity = 71/211 (33.65%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 71/211 (33.65%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 71/211 (33.65%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADP 250          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 71/211 (33.65%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 71/211 (33.65%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R          D I PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GP++N+ +HL+ P
Sbjct:   62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGP 247          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 71/212 (33.49%), Postives = 100/212 (47.17%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM---------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R           D + PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GPI+N+ +HL+DP
Sbjct:   65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPG-----GSFDPL--------------------GLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 251          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 71/211 (33.65%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 71/212 (33.49%), Postives = 100/212 (47.17%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM---------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R           D + PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GPI+N+ +HL+DP
Sbjct:   65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPG-----GSFDPL--------------------GLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 251          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 70/209 (33.49%), Postives = 100/209 (47.85%), Query Frame = 3
Query:  270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G  F +LL   G++    VW++AG+  F                 S   ++  Q++LMGF E  R         +D + PG     G+F  L                      A D  +  + K+KE+KNGRLAM +M G FVQA VT  GPI N+ +H++DP
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPG-----GAFDPL--------------------GLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 71/211 (33.65%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB22_TOBAC7.123e-2133.65Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC9.303e-2133.65Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_NICPL9.303e-2133.65Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC9.303e-2133.65Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_SOYBN9.303e-2133.65Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_ARATH9.303e-2133.49Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC9.303e-2133.65Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_ARATH9.303e-2133.49Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB215_PEA9.303e-2133.49Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2A_SPIOL1.215e-2033.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bp
GAGGGTTAAATCTTAAATGAATGCGTGGATGCATACCTGAACAAAAAAAT
AGTTGATAGAGAGAGAAACAAAAAATGGCCGTTGCAGTTGGAAGAGGCTT
CCTCCTTCAGCCTTCCTCTTCATCGTCCTTCATTTCTAAGGACGTAAATA
AATCGTCAATAGGTATCACTAGCGCATTTCTGCCTGCCAAACCAGGAACC
ACTCGACGTTATTTGGCAACTGTGGTTCGAGCCCAGCAGCGACCAACATG
GCTCCCTGGAGTCGACCCTCCTCCCTACCTTGATGGAACTTTGGCTGGAG
ATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCGGAGAGCTTAAGG
TGGTATGTGCAGGCGGAGTTGGTGCATGCCCGTTTTGCTATGGCTGGAGT
TGCTGGAATTCTTTTCACAGATTTACTCCGCGTAACAGGGATCCGAGAGT
TGCCAGTCTGGTATGAAGCCGGTGCAGTTGAATTCAAGTTTGCCAGCACA
AGAACTTTGTTCATCGTGCAACTACTATTGATGGGCTTCGCTGAAACCAA
AAGGTATATGGATTACATTAGTCCTGGATCACAAGCCAAAGAGGGATCCT
TCTTTGGATTGGAAGCTTCGCTGGAAGGTTTAGAGCCTGGCTACCCTGGA
GGTCCTCTGCTAAACCCTCTTGGCCTGGCTAAAGATATCAGAAATGCTCG
CGACTGGAAGCTTAAAGAGATTAAGAATGGACGACTTGCAATGGTAGCTA
TGCTTGGTATCTTTGTGCAAGCTTCTGTGACTCATGTTGGTCCAATTGAT
AACATTTTGGAGCACCTCTCCGATCCATGGCACAAAACCATT
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